RNA–Protein interactions for RNA: ENST00000450066.6

USP39-207, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,086 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-207ENST00000450066 CLDN6P56747 220 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 SKP2Q13309 424 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 TRIP6Q15654 476 aaKnown RBP13.09□□□□□ -0.31
USP39-207ENST00000450066 CD226Q15762 336 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 NDUFAF6Q330K2 333 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 SLX4IPQ5VYV7 408 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 ULK3Q6PHR2 472 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 GLRX5Q86SX6 157 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 AMER2Q8N7J2 671 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 OR5L2Q8NGL0 311 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 GRHL3Q8TE85 626 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 HS6ST2Q96MM7 605 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 DEPDC7Q96QD5 511 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 ZNF226Q9NYT6 803 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 CNIH4Q9P003 139 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 PADI1Q9ULC6 663 aa13.09□□□□□ -0.31
USP39-207ENST00000450066 CCDC187A0A096LP49 1063 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 PLD2O14939 933 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 ZNF264O43296 627 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 MPZL2O60487 215 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 OR6B1O95007 311 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 CDK4P11802 303 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 GABRB1P18505 474 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 ENDOUP21128 410 aaKnown RBP13.08□□□□□ -0.32
USP39-207ENST00000450066 FMO3P31513 532 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 STAT5AP42229 794 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 RBM34P42696 430 aaKnown RBP13.08□□□□□ -0.32
USP39-207ENST00000450066 COPZ1P61923 177 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 ALG10BQ5I7T1 473 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 FAM69BQ5VUD6 431 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 C6orf15Q6UXA7 325 aaPredicted RBP13.08□□□□□ -0.32
USP39-207ENST00000450066 RASSF6Q6ZTQ3 369 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 SATL1Q86VE3 508 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 POGLUT1Q8NBL1 392 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 PHOSPHO1Q8TCT1 267 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 ARSGQ96EG1 525 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 ZNF426Q9BUY5 554 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 LIN28AQ9H9Z2 209 aaKnown RBP13.08□□□□□ -0.32
USP39-207ENST00000450066 SCN3BQ9NY72 215 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 TPRKBQ9Y3C4 175 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 PCDHGA3Q9Y5H0 932 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 NPFFR2Q9Y5X5 522 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 PMS2P1A4D2B8 440 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 TMEM200CA6NKL6 621 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 ALG1L2C9J202 215 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 GTPBP1O00178 669 aaKnown RBP13.08□□□□□ -0.32
USP39-207ENST00000450066 XPNPEP2O43895 674 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 PIP5K1CO60331 668 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 ZFAND5O76080 213 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 DLGAP3O95886 979 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 LINGO3P0C6S8 592 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 ALDH3B2P48448 385 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 GIPRP48546 466 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 PRKCDQ05655 676 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 PCOLCEQ15113 449 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 NADK2Q4G0N4 442 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 BROXQ5VW32 411 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 C12orf73Q69YU5 71 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 DESI1Q6ICB0 168 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 KIRREL2Q6UWL6 708 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 DHRS13Q6UX07 377 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 LINC00114Q6XXX2 140 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 MEX3DQ86XN8 651 aaKnown RBP13.08□□□□□ -0.32
USP39-207ENST00000450066 KIF18BQ86Y91 864 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 P3H2Q8IVL5 708 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 CADM2Q8N3J6 435 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 GATSQ8NAP1 163 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 WDR36Q8NI36 951 aaKnown RBP13.08□□□□□ -0.32
USP39-207ENST00000450066 RNF217Q8TC41 542 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 DNAJA4Q8WW22 397 aaPredicted RBP13.08□□□□□ -0.32
USP39-207ENST00000450066 TRUB1Q8WWH5 349 aaKnown RBP13.08□□□□□ -0.32
USP39-207ENST00000450066 SPRY4Q9C004 299 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 ZNF700Q9H0M5 742 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 NDUFA13Q9P0J0 144 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 RPS6KB2Q9UBS0 482 aa13.08□□□□□ -0.32
USP39-207ENST00000450066 SMIM31A0A1B0GVY4 71 aa13.07□□□□□ -0.32
USP39-207ENST00000450066 FOXD2O60548 495 aaPredicted RBP13.07□□□□□ -0.32
USP39-207ENST00000450066 PPM1BO75688 479 aa13.07□□□□□ -0.32
USP39-207ENST00000450066 FOLR3P41439 243 aa13.07□□□□□ -0.32
USP39-207ENST00000450066 GPR4P46093 362 aa13.07□□□□□ -0.32
USP39-207ENST00000450066 CTBP2P56545 445 aa13.07□□□□□ -0.32
USP39-207ENST00000450066 EFR3AQ14156 821 aa13.07□□□□□ -0.32
USP39-207ENST00000450066 SMN1Q16637 294 aaKnown RBP13.07□□□□□ -0.32
USP39-207ENST00000450066 STPG1Q5TH74 334 aa13.07□□□□□ -0.32
USP39-207ENST00000450066 CCDC103Q8IW40 242 aa13.07□□□□□ -0.32
USP39-207ENST00000450066 LAT2Q9GZY6 243 aa13.07□□□□□ -0.32
USP39-207ENST00000450066 DUSP21Q9H596 190 aa13.07□□□□□ -0.32
USP39-207ENST00000450066 PLCXD1Q9NUJ7 323 aa13.07□□□□□ -0.32
USP39-207ENST00000450066 PAK1IP1Q9NWT1 392 aaPredicted RBP13.07□□□□□ -0.32
USP39-207ENST00000450066 SELENONQ9NZV5 590 aa13.07□□□□□ -0.32
USP39-207ENST00000450066 TMEM5Q9Y2B1 443 aa13.07□□□□□ -0.32
USP39-207ENST00000450066 CARD8Q9Y2G2 431 aa13.07□□□□□ -0.32
USP39-207ENST00000450066 MED31Q9Y3C7 131 aa13.07□□□□□ -0.32
USP39-207ENST00000450066 IGHV1-45A0A0A0MS14 117 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 A0A1W2PNU3 283 aaPredicted RBP13.06□□□□□ -0.32
USP39-207ENST00000450066 C9orf172C9J069 976 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 PTGES3LE9PB15 166 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 FADS1O60427 444 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 NAGAP17050 411 aa13.06□□□□□ -0.32
USP39-207ENST00000450066 SLC35A2P78381 396 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms