RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 M0R129 80 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 PRAMEF10O60809 474 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 POU3F2P20265 443 aaPredicted RBP6.89□□□□□ -1.31
SYNE1-213ENST00000448038 TRHRP34981 398 aaPredicted RBP6.89□□□□□ -1.31
SYNE1-213ENST00000448038 RPS5P46782 204 aaKnown RBP6.89□□□□□ -1.31
SYNE1-213ENST00000448038 DAP3P51398 398 aaKnown RBP6.89□□□□□ -1.31
SYNE1-213ENST00000448038 PSMD7P51665 324 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 DUSP5Q16690 384 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 CA13Q8N1Q1 262 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 SDR9C7Q8NEX9 313 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 GPBAR1Q8TDU6 330 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 GAB3Q8WWW8 586 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 UTP23Q9BRU9 249 aaKnown RBP6.89□□□□□ -1.31
SYNE1-213ENST00000448038 RBM24Q9BX46 236 aaKnown RBP6.89□□□□□ -1.31
SYNE1-213ENST00000448038 CLEC4MQ9H2X3 399 aaPredicted RBP6.89□□□□□ -1.31
SYNE1-213ENST00000448038 DSN1Q9H410 356 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 CD300AQ9UGN4 299 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 ZNF222Q9UK12 451 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 SH2B3Q9UQQ2 575 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 SHISA7A6NL88 538 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 ACOT8O14734 319 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 GREM1O60565 184 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 CHRNB1P11230 501 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 IDUAP35475 653 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 GGT2P36268 569 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 CSNK2A1P68400 391 aaPredicted RBP6.89□□□□□ -1.31
SYNE1-213ENST00000448038 SIGLEC14Q08ET2 396 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 SRSF5Q13243 272 aaKnown RBP6.89□□□□□ -1.31
SYNE1-213ENST00000448038 SLC18B1Q6NT16 456 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 HMBOX1Q6NT76 420 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 ARHGAP22Q7Z5H3 698 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 ADGRF3Q8IZF5 1079 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 LRRC17Q8N6Y2 441 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 SYT14Q8NB59 555 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 MVB12AQ96EY5 273 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 TTYH1Q9H313 450 aaPredicted RBP6.89□□□□□ -1.31
SYNE1-213ENST00000448038 C19orf53Q9UNZ5 99 aaPredicted RBP6.89□□□□□ -1.31
SYNE1-213ENST00000448038 ZNF337Q9Y3M9 751 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 A0A1W2PPW3 197 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 TMEM221A6NGB7 291 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 M0R296 226 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 TAF4O00268 1085 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 DSCR3O14972 297 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 PPM1DO15297 605 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 FLRT2O43155 660 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 NUDT21O43809 227 aaKnown RBP6.89□□□□□ -1.31
SYNE1-213ENST00000448038 BTG2P78543 158 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 FAM53BQ14153 422 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 IHHQ14623 411 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 QSOX2Q6ZRP7 698 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 LINC00696Q6ZRV3 163 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 TMPPEQ6ZT21 453 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 ZNF227Q86WZ6 799 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 ZFP41Q8N8Y5 198 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 NEIL3Q8TAT5 605 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 ZMYND19Q96E35 227 aaPredicted RBP6.89□□□□□ -1.31
SYNE1-213ENST00000448038 ZNF597Q96LX8 424 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 DCBLD2Q96PD2 775 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 INIPQ9NRY2 104 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 A0A1W2PPK0 400 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 A6NIZ1 184 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 ARHGAP33O14559 1287 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 PRODHO43272 600 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 PRKAR1BP31321 381 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 NXPH1P58417 271 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 RAB15P59190 212 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 RAP1BP61224 184 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 RAP1AP62834 184 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 C17orf67Q0P5P2 114 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 ZNF791Q3KP31 576 aaPredicted RBP6.89□□□□□ -1.31
SYNE1-213ENST00000448038 SAXO2Q658L1 398 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 XKR5Q6UX68 686 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 GALNTL5Q7Z4T8 443 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 MISPQ8IVT2 679 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 OR1J4Q8NGS1 313 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 CPNE2Q96FN4 548 aaPredicted RBP6.89□□□□□ -1.31
SYNE1-213ENST00000448038 PGAM5Q96HS1 289 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 OR2A14Q96R47 310 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 STACQ99469 402 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 MCTS1Q9ULC4 181 aaKnown RBP6.89□□□□□ -1.31
SYNE1-213ENST00000448038 LOXL2Q9Y4K0 774 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 R4GN57 208 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 ZNF236Q9UL36 1845 aa6.89□□□□□ -1.31
SYNE1-213ENST00000448038 A0A1W2PPC1 479 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 A0A1W2PQF6 199 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 G3V3Y1 287 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 SYT5O00445 386 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 TACR3P29371 465 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 CRABP1P29762 137 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 ADAM8P78325 824 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 TRAM1Q15629 374 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 EXT1Q16394 746 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 PRSS48Q7RTY5 328 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 CEACAM19Q7Z692 300 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 ESX1Q8N693 406 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 TFAP2CQ92754 450 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 TUBA1CQ9BQE3 449 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 SP140LQ9H930 580 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 ATP13A2Q9NQ11 1180 aa6.88□□□□□ -1.31
SYNE1-213ENST00000448038 DUSP22Q9NRW4 184 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.8 ms