RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 B4DXG7 233 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 G3V2L1 256 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 GTPBP1O00178 669 aaKnown RBP6.94□□□□□ -1.3
VPS50-204ENST00000438395 HS3ST1O14792 307 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 CLOCKO15516 846 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 PLIN3O60664 434 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 NKX2-2O95096 273 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 CGAP01215 116 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 IGKV1D-16P01601 117 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 OPN1LWP04000 364 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 FESP07332 822 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 SDC1P18827 310 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 ELK4P28324 431 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 CRHR1P34998 444 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 CCR4P51679 360 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 RPS4XP62701 263 aaKnown RBP6.94□□□□□ -1.3
VPS50-204ENST00000438395 TP53BP2Q13625 1128 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 VEZF1Q14119 521 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 RNPS1Q15287 305 aaKnown RBP6.94□□□□□ -1.3
VPS50-204ENST00000438395 GUSBP1Q15486 140 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 DUSP5Q16690 384 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 CPEB4Q17RY0 729 aaKnown RBP eCLIP6.94□□□□□ -1.3
VPS50-204ENST00000438395 TMEM44Q2T9K0 475 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 PLPPR5Q32ZL2 321 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 CPTPQ5TA50 214 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 LIPMQ5VYY2 423 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 LRIG3Q6UXM1 1119 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 STAC2Q6ZMT1 411 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 GGNQ86UU5 652 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 LILRA2Q8N149 483 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 SLC16A11Q8NCK7 471 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 OR56A1Q8NGH5 318 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 OR4C3Q8NH37 302 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.94□□□□□ -1.3
VPS50-204ENST00000438395 PHOSPHO1Q8TCT1 267 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 OSTF1Q92882 214 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 KISS1RQ969F8 398 aaPredicted RBP6.94□□□□□ -1.3
VPS50-204ENST00000438395 CPNE4Q96A23 557 aaPredicted RBP6.94□□□□□ -1.3
VPS50-204ENST00000438395 OTUB1Q96FW1 271 aaPredicted RBP6.94□□□□□ -1.3
VPS50-204ENST00000438395 PLPPR2Q96GM1 343 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 EGLN2Q96KS0 407 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 PRPF18Q99633 342 aaKnown RBP6.94□□□□□ -1.3
VPS50-204ENST00000438395 BTBD2Q9BX70 525 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 HDHD5Q9BXW7 423 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 RTN4RQ9BZR6 473 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 HOXD1Q9GZZ0 328 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 ESRP2Q9H6T0 727 aaKnown RBP6.94□□□□□ -1.3
VPS50-204ENST00000438395 EML4Q9HC35 981 aaKnown RBP6.94□□□□□ -1.3
VPS50-204ENST00000438395 PLSCR4Q9NRQ2 329 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 ATAD3AQ9NVI7 634 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 OXSMQ9NWU1 459 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 EMCNQ9ULC0 261 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 GPR52Q9Y2T5 361 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 RNF115Q9Y4L5 304 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 ZANQ9Y493 2812 aa6.94□□□□□ -1.3
VPS50-204ENST00000438395 USF3Q68DE3 2245 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 FBN3Q75N90 2809 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 DNHD1Q96M86 4753 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 A0A1W2PPM1 405 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 A0A1W2PQD3 144 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 ADAMDEC1O15204 470 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 CFLARO15519 480 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 SOX30O94993 753 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 KCNK2O95069 426 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 CNOT4O95628 575 aaKnown RBP6.93□□□□□ -1.3
VPS50-204ENST00000438395 TP53P04637 393 aaPredicted RBP6.93□□□□□ -1.3
VPS50-204ENST00000438395 FAM153BP0C7A2 387 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 LINC00032P0C843 101 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 ACP2P11117 423 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 KRT4P19013 534 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 FSTP19883 344 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 PSMB1P20618 241 aaKnown RBP6.93□□□□□ -1.3
VPS50-204ENST00000438395 EFNA1P20827 205 aaPredicted RBP6.93□□□□□ -1.3
VPS50-204ENST00000438395 PRPH2P23942 346 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 AGTR1P30556 359 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 SOAT1P35610 550 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 SUMO3P55854 103 aaPredicted RBP6.93□□□□□ -1.3
VPS50-204ENST00000438395 FOXF1Q12946 379 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 LASP1Q14847 261 aaKnown RBP6.93□□□□□ -1.3
VPS50-204ENST00000438395 ETFDHQ16134 617 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 ZNF239Q16600 458 aaKnown RBP6.93□□□□□ -1.3
VPS50-204ENST00000438395 PRSS53Q2L4Q9 553 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 FAM153CQ494X1 144 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 ATP6AP1LQ52LC2 224 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 CCNJQ5T5M9 372 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 ZCCHC12Q6PEW1 402 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 BHLHB9Q6PI77 547 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 APOOLQ6UXV4 268 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 TRABD2AQ86V40 505 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 C4orf33Q8N1A6 199 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 ZNF619Q8N2I2 560 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 ZNF611Q8N823 705 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 ATP6V1C2Q8NEY4 427 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 ADAMTS15Q8TE58 950 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 AKAP1Q92667 903 aaKnown RBP eCLIP6.93□□□□□ -1.3
VPS50-204ENST00000438395 S100PBPQ96BU1 408 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 MTERF3Q96E29 417 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 ARSGQ96EG1 525 aa6.93□□□□□ -1.3
VPS50-204ENST00000438395 TRMT61AQ96FX7 289 aaKnown RBP6.93□□□□□ -1.3
VPS50-204ENST00000438395 PPP3R2Q96LZ3 170 aa6.93□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms