RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 NMUR1Q9HB89 426 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 CD1DP15813 335 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 CDK5Q00535 292 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 TGFBR3Q03167 851 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 SEMA3BQ13214 749 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 GPR157Q5UAW9 335 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 OR4F3Q6IEY1 312 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 LSRQ86X29 649 aaPredicted RBP6.79□□□□□ -1.32
VPS53-204ENST00000437048 SLC46A1Q96NT5 459 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 RIMS4Q9H426 269 aaPredicted RBP6.79□□□□□ -1.32
VPS53-204ENST00000437048 CACNA1GO43497 2377 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 TGM5O43548 720 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 ITGB5P18084 799 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 OR10A3P58181 314 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 FCN2Q15485 313 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 SLC38A3Q99624 504 aa6.79□□□□□ -1.32
VPS53-204ENST00000437048 NEDD8-MDP1E9PL57 170 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 I6L893 689 aaPredicted RBP6.78□□□□□ -1.32
VPS53-204ENST00000437048 CLRN1P58418 232 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 CATSPEREQ5SY80 951 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 TMEM156Q8N614 296 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 OR1S1Q8NH92 325 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 JOSD2Q8TAC2 188 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 CIB3Q96Q77 187 aaPredicted RBP6.78□□□□□ -1.32
VPS53-204ENST00000437048 KCNJ15Q99712 375 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 ZNF337Q9Y3M9 751 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 SOCS2O14508 198 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 KDELR3O43731 214 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 GPR37L1O60883 481 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 SMIM10L2AP0DMW4 78 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 SMIM10L2BP0DMW5 78 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 CCKARP32238 428 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 SFTPDP35247 375 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 TAF10Q12962 218 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 USP50Q70EL3 339 aaPredicted RBP6.78□□□□□ -1.32
VPS53-204ENST00000437048 YIPF5Q969M3 257 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 ADAM7Q9H2U9 754 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 NIT2Q9NQR4 276 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 SUSD2Q9UGT4 822 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 SLX4Q8IY92 1834 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 TOXO94900 526 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 PTHLHP12272 177 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 TGM1P22735 817 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 ELK4P28324 431 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 STT3AP46977 705 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 PDGFRLQ15198 375 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 IL17AQ16552 155 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 DCAF12L1Q5VU92 463 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 EBPLQ9BY08 206 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 PBX4Q9BYU1 374 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 RHBGQ9H310 441 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 TAS2R16Q9NYV7 291 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 KCNG2Q9UJ96 466 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 TRIM77I1YAP6 450 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 ERI3O43414 337 aaKnown RBP6.78□□□□□ -1.32
VPS53-204ENST00000437048 RAB6AP20340 208 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 MAP2K6P52564 334 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 TNK1Q13470 666 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 RTL8BQ17RB0 113 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 NCBP2-AS2Q69YL0 99 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 GRINAQ7Z429 371 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 CMBLQ96DG6 245 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 NRIP3Q9NQ35 241 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 EXOSC3Q9NQT5 275 aaKnown RBP6.78□□□□□ -1.32
VPS53-204ENST00000437048 CORINQ9Y5Q5 1042 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 POLEQ07864 2286 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 DOCK9Q9BZ29 2069 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 IGHEP01854 428 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 CEACAM7Q14002 265 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 TMEM198Q66K66 360 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 TMEM220Q6QAJ8 160 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 NETO1Q8TDF5 533 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 DDIT4LQ96D03 193 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 HRH4Q9H3N8 390 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 WDR6Q9NNW5 1121 aaKnown RBP6.78□□□□□ -1.32
VPS53-204ENST00000437048 TRABD2BA6NFA1 517 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 CACNG3O60359 315 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 AHCYP23526 432 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 AK4P27144 223 aaPredicted RBP6.78□□□□□ -1.32
VPS53-204ENST00000437048 GCAP28676 217 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 TMPPEQ6ZT21 453 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 OR6M1Q8NGM8 313 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 OIT3Q8WWZ8 545 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 RRAGCQ9HB90 399 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 SLC5A2P31639 672 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 RAB13P51153 203 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 KCNQ1P51787 676 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 MS4A13Q5J8X5 152 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 SLC35F2Q8IXU6 374 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 PDZD7Q9H5P4 517 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 SLC35D1Q9NTN3 355 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 ASH2LQ9UBL3 628 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 CD300LBA8K4G0 201 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 SLC35E2BP0CK96 405 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 HLA-DOBP13765 273 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 DDCP20711 480 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 CLDN10P78369 228 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 Q499Y3 187 aa6.78□□□□□ -1.32
VPS53-204ENST00000437048 SAT2Q96F10 170 aaPredicted RBP6.78□□□□□ -1.32
VPS53-204ENST00000437048 CCDC120Q96HB5 630 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 53.9 ms