RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 HGFACQ04756 655 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 PIN1Q13526 163 aaPredicted RBP4.78□□□□□ -1.64
RIF1-203ENST00000428287 C9orf131Q5VYM1 1079 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 PODNL1Q6PEZ8 512 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 RAB40AQ8WXH6 277 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 WFDC6Q9BQY6 131 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 TCEAL7Q9BRU2 100 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 PLA2G12AQ9BZM1 189 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 SLC6A16Q9GZN6 736 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 SLAMF7Q9NQ25 335 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 HINT3Q9NQE9 182 aaKnown RBP4.78□□□□□ -1.64
RIF1-203ENST00000428287 CACNG4Q9UBN1 327 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 PCDHGA9Q9Y5G4 932 aaKnown RBP4.78□□□□□ -1.64
RIF1-203ENST00000428287 SETD2Q9BYW2 2564 aaPredicted RBP4.78□□□□□ -1.64
RIF1-203ENST00000428287 TRAPPC13A5PLN9 417 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 MGAT4DA6NG13 374 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 RFXAPO00287 272 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 SYN3O14994 580 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 TREHO43280 583 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 FGF16O43320 207 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 TSPAN3O60637 253 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 TSC22D2O75157 780 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 FCER2P06734 321 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 ANXA4P09525 319 aaPredicted RBP4.78□□□□□ -1.64
RIF1-203ENST00000428287 RAB3BP20337 219 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 INPP1P49441 399 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 LSM11P83369 360 aaKnown RBP eCLIP4.78□□□□□ -1.64
RIF1-203ENST00000428287 PITPNAQ00169 270 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 PWWP2BQ6NUJ5 590 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 GSG1LQ6UXU4 331 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 TECPR1Q7Z6L1 1165 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 OR4D9Q8NGE8 314 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 ELP4Q96EB1 424 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 CACYBPQ9HB71 228 aaKnown RBP4.78□□□□□ -1.64
RIF1-203ENST00000428287 ZFP57Q9NU63 452 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 TAS2R8Q9NYW2 309 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 OR10H3O60404 316 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 CNMDO75829 334 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 CBX7O95931 251 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 WNT1P04628 370 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 ZNF286BP0CG31 522 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 DRD5P21918 477 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 STX4Q12846 297 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 MARCH9Q86YJ5 346 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 ACOT11Q8WXI4 607 aaPredicted RBP4.78□□□□□ -1.64
RIF1-203ENST00000428287 GTF3AQ92664 365 aaKnown RBP4.78□□□□□ -1.64
RIF1-203ENST00000428287 TEAD3Q99594 435 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 ARL6Q9H0F7 186 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 TLNRD1Q9H1K6 362 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 MVB12BQ9H7P6 319 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 UCK1Q9HA47 277 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 TEX10Q9NXF1 929 aaPredicted RBP4.78□□□□□ -1.64
RIF1-203ENST00000428287 ACTR10Q9NZ32 417 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 ANGPT4Q9Y264 503 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 PCDHGA5Q9Y5G8 931 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 TRAV20A0A0B4J274 112 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 PRAMEF27A3QJZ7 478 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 LRRC72A6NJI9 287 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 EEF1E1O43324 174 aaKnown RBP4.78□□□□□ -1.64
RIF1-203ENST00000428287 SH3BGRLO75368 114 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 RDH16O75452 317 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 TBX6O95947 436 aaPredicted RBP4.78□□□□□ -1.64
RIF1-203ENST00000428287 CCR6P51684 374 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 OR5M10Q6IEU7 315 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 NCEH1Q6PIU2 408 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 ALKAL2Q6UX46 152 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 ZNF620Q6ZNG0 422 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 GPR142Q7Z601 462 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 LDLRAD3Q86YD5 345 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 TOMM5Q8N4H5 51 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 KCNRGQ8N5I3 272 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 ST8SIA2Q92186 375 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 LRRC46Q96FV0 321 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 SLC25A21Q9BQT8 299 aaPredicted RBP4.78□□□□□ -1.64
RIF1-203ENST00000428287 BCL2L14Q9BZR8 327 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 NKX6-2Q9C056 277 aaPredicted RBP4.78□□□□□ -1.64
RIF1-203ENST00000428287 HDHD2Q9H0R4 259 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 MALT1Q9UDY8 824 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 MIOXQ9UGB7 285 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 ZNF222Q9UK12 451 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 ACSL6Q9UKU0 697 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 CENPEQ02224 2701 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 SBK2P0C263 348 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 DDX6P26196 483 aaKnown RBP eCLIP4.78□□□□□ -1.641e-8■■■□□ 17.3
RIF1-203ENST00000428287 OMPP47874 163 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 SLC6A11P48066 632 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 CSNK1EP49674 416 aaKnown RBP4.78□□□□□ -1.64
RIF1-203ENST00000428287 INSL4Q14641 139 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 SPDYE7PQ495Y7 208 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 ZNF385BQ569K4 471 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 ADGRF1Q5T601 910 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 FAM122BQ7Z309 247 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 BCDIN3DQ7Z5W3 292 aaKnown RBP4.78□□□□□ -1.64
RIF1-203ENST00000428287 COMTD1Q86VU5 262 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 SKA3Q8IX90 412 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 GPR135Q8IZ08 494 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 SPAG16Q8N0X2 631 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 SLAIN1Q8ND83 568 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 NR4A3Q92570 626 aa4.78□□□□□ -1.64
RIF1-203ENST00000428287 XRN2Q9H0D6 950 aaKnown RBP eCLIP4.78□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms