RNA–Protein interactions for RNA: ENST00000414220.2

CHD1-202, Transcript of chromodomain helicase DNA binding protein 1, humanhuman

TSL 5

Gene CHD1, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD1-202ENST00000414220 Q9UFV3 132 aa13.29□□□□□ -0.28
CHD1-202ENST00000414220 PRDM4Q9UKN5 801 aa13.29□□□□□ -0.28
CHD1-202ENST00000414220 ICAM5Q9UMF0 924 aa13.29□□□□□ -0.28
CHD1-202ENST00000414220 LRRK2Q5S007 2527 aa13.29□□□□□ -0.28
CHD1-202ENST00000414220 A0A0G2JPF8 293 aa13.28□□□□□ -0.28
CHD1-202ENST00000414220 MBD3L4A6NDZ8 208 aaPredicted RBP13.28□□□□□ -0.28
CHD1-202ENST00000414220 MBD3L3A6NE82 208 aaPredicted RBP13.28□□□□□ -0.28
CHD1-202ENST00000414220 MBD3L5A6NJ08 208 aaPredicted RBP13.28□□□□□ -0.28
CHD1-202ENST00000414220 FAM90A27PA6NNH2 459 aa13.28□□□□□ -0.28
CHD1-202ENST00000414220 HNRNPCL2B2RXH8 293 aa13.28□□□□□ -0.28
CHD1-202ENST00000414220 HNRNPCL3B7ZW38 293 aa13.28□□□□□ -0.28
CHD1-202ENST00000414220 HNRNPCL1O60812 293 aaKnown RBP13.28□□□□□ -0.28
CHD1-202ENST00000414220 BCHEP06276 602 aa13.28□□□□□ -0.28
CHD1-202ENST00000414220 UBTFL6P0CB48 400 aaPredicted RBP13.28□□□□□ -0.28
CHD1-202ENST00000414220 HNRNPCL4P0DMR1 293 aa13.28□□□□□ -0.28
CHD1-202ENST00000414220 CAPN3P20807 821 aa13.28□□□□□ -0.28
CHD1-202ENST00000414220 CTSSP25774 331 aa13.28□□□□□ -0.28
CHD1-202ENST00000414220 CEACAM8P31997 349 aaPredicted RBP13.28□□□□□ -0.28
CHD1-202ENST00000414220 LARS2Q15031 903 aaKnown RBP13.28□□□□□ -0.28
CHD1-202ENST00000414220 GTDC1Q4AE62 458 aa13.28□□□□□ -0.28
CHD1-202ENST00000414220 PRAMEF8Q5VWM4 474 aa13.28□□□□□ -0.28
CHD1-202ENST00000414220 PRAMEF7Q5VXH5 474 aa13.28□□□□□ -0.28
CHD1-202ENST00000414220 CBLN3Q6UW01 205 aa13.28□□□□□ -0.28
CHD1-202ENST00000414220 ESPNLQ6ZVH7 1005 aa13.28□□□□□ -0.28
CHD1-202ENST00000414220 ZNF440Q8IYI8 595 aa13.28□□□□□ -0.28
CHD1-202ENST00000414220 MBD3L2Q8NHZ7 208 aaPredicted RBP13.28□□□□□ -0.28
CHD1-202ENST00000414220 GPR119Q8TDV5 335 aa13.28□□□□□ -0.28
CHD1-202ENST00000414220 ST8SIA1Q92185 356 aa13.28□□□□□ -0.28
CHD1-202ENST00000414220 AURKBQ96GD4 344 aaPredicted RBP13.28□□□□□ -0.28
CHD1-202ENST00000414220 RNF145Q96MT1 663 aa13.28□□□□□ -0.28
CHD1-202ENST00000414220 SLC24A3Q9HC58 644 aa13.28□□□□□ -0.28
CHD1-202ENST00000414220 EXOSC3Q9NQT5 275 aaKnown RBP13.28□□□□□ -0.28
CHD1-202ENST00000414220 SLC6A13Q9NSD5 602 aa13.28□□□□□ -0.28
CHD1-202ENST00000414220 IFT52Q9Y366 437 aa13.28□□□□□ -0.28
CHD1-202ENST00000414220 L3MBTL1Q9Y468 752 aa13.28□□□□□ -0.28
CHD1-202ENST00000414220 SPIN1Q9Y657 262 aaPredicted RBP13.28□□□□□ -0.28
CHD1-202ENST00000414220 TNFSF12-TNFSF13A0A0A6YY99 330 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 AGAP5A6NIR3 686 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 SLC22A20A6NK97 555 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 B4DXG7 233 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 EIF1AYO14602 144 aaKnown RBP13.27□□□□□ -0.29
CHD1-202ENST00000414220 HNRNPRO43390 633 aaKnown RBP13.27□□□□□ -0.29
CHD1-202ENST00000414220 CCDC22O60826 627 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 RCBTB2O95199 551 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 SYNGR4O95473 234 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 IL18BPO95998 194 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 CHRM4P08173 479 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 TFPTP0C1Z6 253 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 LINGO3P0C6S8 592 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 TMIGD3P0DMS9 266 aaPredicted RBP13.27□□□□□ -0.29
CHD1-202ENST00000414220 FCGR2AP12318 317 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 COX6B1P14854 86 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 PEX19P40855 299 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 RNF144AP50876 292 aaPredicted RBP13.27□□□□□ -0.29
CHD1-202ENST00000414220 FUT5Q11128 374 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 NFYCQ13952 458 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 QPRTQ15274 297 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 TMEM44Q2T9K0 475 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 LIN52Q52LA3 116 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 PAGE3Q5JUK9 113 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 GCNT6Q5T4J0 391 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 GTF2IRD2BQ6EKJ0 949 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 DHDDSQ86SQ9 333 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 GTF2IRD2Q86UP8 949 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 KRT73Q86Y46 540 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 LILRA2Q8N149 483 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 TNIP2Q8NFZ5 429 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 OR52P1PQ8NH57 321 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 FBXO27Q8NI29 283 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 BBS10Q8TAM1 723 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 SLC38A5Q8WUX1 472 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 REXO5Q96IC2 774 aaKnown RBP13.27□□□□□ -0.29
CHD1-202ENST00000414220 SH3GL1Q99961 368 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 SPATA5L1Q9BVQ7 753 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 SLC38A1Q9H2H9 487 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 ZNF385DQ9H6B1 395 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 KCNE5Q9UJ90 142 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 MCTS1Q9ULC4 181 aaKnown RBP13.27□□□□□ -0.29
CHD1-202ENST00000414220 ZNF175Q9Y473 711 aa13.27□□□□□ -0.29
CHD1-202ENST00000414220 USP9XQ93008 2570 aaPredicted RBP13.27□□□□□ -0.29
CHD1-202ENST00000414220 BBIP1A8MTZ0 92 aa13.26□□□□□ -0.29
CHD1-202ENST00000414220 SHISA8B8ZZ34 492 aa13.26□□□□□ -0.29
CHD1-202ENST00000414220 NCKAP5O14513 1909 aa13.26□□□□□ -0.29
CHD1-202ENST00000414220 SLC22A2O15244 555 aa13.26□□□□□ -0.29
CHD1-202ENST00000414220 PABPC4LP0CB38 370 aaKnown RBP13.26□□□□□ -0.29
CHD1-202ENST00000414220 BMP2P12643 396 aa13.26□□□□□ -0.29
CHD1-202ENST00000414220 NID1P14543 1247 aa13.26□□□□□ -0.29
CHD1-202ENST00000414220 PRKCAP17252 672 aa13.26□□□□□ -0.29
CHD1-202ENST00000414220 BMP5P22003 454 aa13.26□□□□□ -0.29
CHD1-202ENST00000414220 FKBP2P26885 142 aaKnown RBP13.26□□□□□ -0.29
CHD1-202ENST00000414220 PGM1P36871 562 aa13.26□□□□□ -0.29
CHD1-202ENST00000414220 EIF1AXP47813 144 aaKnown RBP13.26□□□□□ -0.29
CHD1-202ENST00000414220 MVDP53602 400 aa13.26□□□□□ -0.29
CHD1-202ENST00000414220 CLDN15P56746 228 aa13.26□□□□□ -0.29
CHD1-202ENST00000414220 SF3A3Q12874 501 aaKnown RBP eCLIP13.26□□□□□ -0.29
CHD1-202ENST00000414220 FOXF1Q12946 379 aa13.26□□□□□ -0.29
CHD1-202ENST00000414220 SKP2Q13309 424 aa13.26□□□□□ -0.29
CHD1-202ENST00000414220 CYLC2Q14093 348 aaPredicted RBP13.26□□□□□ -0.29
CHD1-202ENST00000414220 MAPK14Q16539 360 aa13.26□□□□□ -0.29
CHD1-202ENST00000414220 PPP4R4Q6NUP7 873 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms