RNA–Protein interactions for RNA: ENST00000409766.7

USP39-204, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 2 BASIC

Gene USP39, Length 2,033 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-204ENST00000409766 HINT3Q9NQE9 182 aaKnown RBP18.57■□□□□ 0.56
USP39-204ENST00000409766 ANKRD33BA6NCL7 494 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 PFDN1O60925 122 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 RFPL3O75679 317 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 HTR1FP30939 366 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 CXCL12P48061 93 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 ATP12AP54707 1039 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 HSD11B2P80365 405 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 BIKQ13323 160 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 ZSWIM7Q19AV6 140 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 TTLL10Q6ZVT0 673 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 SHFQ7M4L6 423 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 BMP8AQ7Z5Y6 402 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 CARFQ8N187 725 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 BCORP1Q8N888 145 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 OR52L1Q8NGH7 329 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 TM9SF4Q92544 642 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 TRMT61AQ96FX7 289 aaKnown RBP18.56■□□□□ 0.56
USP39-204ENST00000409766 PHOX2BQ99453 314 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 DUSP15Q9H1R2 295 aaPredicted RBP18.56■□□□□ 0.56
USP39-204ENST00000409766 SIGLEC7Q9Y286 467 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 SDK1Q7Z5N4 2213 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 ASXL3Q9C0F0 2248 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 TTC36A6NLP5 189 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 RCBTB2O95199 551 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 BMP7P18075 431 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 SEPHS1P49903 392 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 BNC1Q01954 994 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 RPL13AP3Q6NVV1 102 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 CPOQ8IVL8 374 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 SLC35F3Q8IY50 421 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 LNX2Q8N448 690 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 OR9Q1Q8NGQ5 310 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 ABTB1Q969K4 478 aaPredicted RBP18.56■□□□□ 0.56
USP39-204ENST00000409766 EXOSC4Q9NPD3 245 aaKnown RBP18.56■□□□□ 0.56
USP39-204ENST00000409766 EXOGQ9Y2C4 368 aaKnown RBP18.56■□□□□ 0.56
USP39-204ENST00000409766 OR10H1Q9Y4A9 318 aa18.56■□□□□ 0.56
USP39-204ENST00000409766 TMEM150CB9EJG8 249 aa18.55■□□□□ 0.56
USP39-204ENST00000409766 SOX6P35712 828 aa18.55■□□□□ 0.56
USP39-204ENST00000409766 RBM34P42696 430 aaKnown RBP18.55■□□□□ 0.56
USP39-204ENST00000409766 PPP5CP53041 499 aa18.55■□□□□ 0.56
USP39-204ENST00000409766 PSMD4P55036 377 aaKnown RBP18.55■□□□□ 0.56
USP39-204ENST00000409766 ATP1A4Q13733 1029 aa18.55■□□□□ 0.56
USP39-204ENST00000409766 LINC00114Q6XXX2 140 aa18.55■□□□□ 0.56
USP39-204ENST00000409766 MED25Q71SY5 747 aa18.55■□□□□ 0.56
USP39-204ENST00000409766 PLXDC1Q8IUK5 500 aa18.55■□□□□ 0.56
USP39-204ENST00000409766 CMIPQ8IY22 773 aa18.55■□□□□ 0.56
USP39-204ENST00000409766 ZSCAN1Q8NBB4 408 aa18.55■□□□□ 0.56
USP39-204ENST00000409766 ZNF485Q8NCK3 441 aa18.55■□□□□ 0.56
USP39-204ENST00000409766 OR4F15Q8NGB8 312 aa18.55■□□□□ 0.56
USP39-204ENST00000409766 OR13C2Q8NGS9 318 aa18.55■□□□□ 0.56
USP39-204ENST00000409766 OR4C3Q8NH37 302 aa18.55■□□□□ 0.56
USP39-204ENST00000409766 ASPNQ9BXN1 380 aa18.55■□□□□ 0.56
USP39-204ENST00000409766 ISYNA1Q9NPH2 558 aa18.55■□□□□ 0.56
USP39-204ENST00000409766 TBCCD1Q9NVR7 557 aa18.55■□□□□ 0.56
USP39-204ENST00000409766 PRODH2Q9UF12 536 aa18.55■□□□□ 0.56
USP39-204ENST00000409766 FAM183AA6NL82 134 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 C17orf105B2RV13 164 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 PTP4A3O75365 173 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 GIMD1P0DJR0 217 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 SAGP10523 405 aaPredicted RBP18.54■□□□□ 0.56
USP39-204ENST00000409766 GLB1P16278 677 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 SLC1A3P43003 542 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 OR1D4P47884 311 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 DMWDQ09019 674 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 CPEB4Q17RY0 729 aaKnown RBP eCLIP18.54■□□□□ 0.56
USP39-204ENST00000409766 ALG10BQ5I7T1 473 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 SMARCD3Q6STE5 483 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 THSD4Q6ZMP0 1018 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 CXXC5Q7LFL8 322 aaKnown RBP18.54■□□□□ 0.56
USP39-204ENST00000409766 ZNF550Q7Z398 422 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 SNX29P2Q8IUI4 249 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 PTPMT1Q8WUK0 201 aaPredicted RBP18.54■□□□□ 0.56
USP39-204ENST00000409766 GATAD2BQ8WXI9 593 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 MVB12AQ96EY5 273 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 FN3KQ9H479 309 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 GMEB2Q9UKD1 530 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 SPIN1Q9Y657 262 aaPredicted RBP18.54■□□□□ 0.56
USP39-204ENST00000409766 UNC13CQ8NB66 2214 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 A0A1B0GVT2 93 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 TAF4O00268 1085 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 SOCS6O14544 535 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 DUX1O43812 170 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 DCNP07585 359 aaKnown RBP18.54■□□□□ 0.56
USP39-204ENST00000409766 NGFRP08138 427 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 OCM2P0CE71 109 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 OCMP0CE72 109 aaPredicted RBP18.54■□□□□ 0.56
USP39-204ENST00000409766 ALAS2P22557 587 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 CD40LGP29965 261 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 TPBGQ13641 420 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 WDR45BQ5MNZ6 344 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 TUBA3EQ6PEY2 450 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 OR7G1Q8NGA0 311 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 ZDHHC19Q8WVZ1 309 aaPredicted RBP18.54■□□□□ 0.56
USP39-204ENST00000409766 SENP5Q96HI0 755 aaPredicted RBP18.54■□□□□ 0.56
USP39-204ENST00000409766 OR1F2PQ96R84 312 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 ARHGAP9Q9BRR9 750 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 ZNF649Q9BS31 505 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 ERVMER34-1Q9H9K5 563 aa18.54■□□□□ 0.56
USP39-204ENST00000409766 H2AFY2Q9P0M6 372 aaPredicted RBP18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms