RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 RNF217Q8TC41 542 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 GNPDA2Q8TDQ7 276 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 ELP5Q8TE02 316 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 TRIM2Q9C040 744 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 POLR1BQ9H9Y6 1135 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 CNIH4Q9P003 139 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 TCFL5Q9UL49 500 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 NPFFR2Q9Y5X5 522 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 HSPE1-MOB4S4R3N1 261 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 HEATR5AQ86XA9 2040 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 OR6C70A6NIJ9 312 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 ZAR1LA6NP61 321 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 C17orf51A8MQB3 221 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 CHP2O43745 196 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 NGFRP08138 427 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 RAB40ALP0C0E4 278 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 POU1F1P28069 291 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 EVI2BP34910 448 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 IFNGR2P38484 337 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 GPR4P46093 362 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 CDH15P55291 814 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 NUP107P57740 925 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 FBXW4P57775 412 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 CDK5R2Q13319 367 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 MAD2L1BPQ15013 274 aaPredicted RBP12.89□□□□□ -0.35
GPNMB-203ENST00000409458 PTGES3Q15185 160 aaKnown RBP12.89□□□□□ -0.35
GPNMB-203ENST00000409458 TMEM164Q5U3C3 297 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 TMEM236Q5W0B7 351 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 CBLN3Q6UW01 205 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 MARCH3Q86UD3 253 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 MARCH9Q86YJ5 346 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 ZNF440Q8IYI8 595 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 TMCO5AQ8N6Q1 288 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 TSPAN14Q8NG11 270 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 PFN4Q8NHR9 129 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 FAM81AQ8TBF8 368 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 TMEM239Q8WW34 195 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 UBE2FQ969M7 185 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 IMMP1LQ96LU5 166 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 MRPS26Q9BYN8 205 aaKnown RBP12.89□□□□□ -0.35
GPNMB-203ENST00000409458 DSN1Q9H410 356 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 ZBTB20Q9HC78 741 aaPredicted RBP12.89□□□□□ -0.35
GPNMB-203ENST00000409458 EXOSC3Q9NQT5 275 aaKnown RBP12.89□□□□□ -0.35
GPNMB-203ENST00000409458 CARD8Q9Y2G2 431 aa12.89□□□□□ -0.35
GPNMB-203ENST00000409458 A0A1W2PQD3 144 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 TRIM64A6NGJ6 449 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 ALG1L2C9J202 215 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 H3BN98 237 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 M0R129 80 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 GTPBP1O00178 669 aaKnown RBP12.88□□□□□ -0.35
GPNMB-203ENST00000409458 ZNF264O43296 627 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 KLF4O43474 513 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 FADS1O60427 444 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 TNFSF15O95150 251 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 IGHEP01854 428 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 CD63P08962 238 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 ATP6V1B1P15313 513 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 CCR4P51679 360 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 ALDH6A1Q02252 535 aaKnown RBP12.88□□□□□ -0.35
GPNMB-203ENST00000409458 ZNF117Q03924 483 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 COX10Q12887 443 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 TSPAN31Q12999 210 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 EXT1Q16394 746 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 C6orf141Q5SZD1 244 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 RRM2BQ7LG56 351 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 PPP1R32Q7Z5V6 425 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 KIF18BQ86Y91 864 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 ESX1Q8N693 406 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 OR11G2Q8NGC1 345 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 OR5M3Q8NGP4 307 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 APH1BQ8WW43 257 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 HDAC2Q92769 488 aaKnown RBP12.88□□□□□ -0.35
GPNMB-203ENST00000409458 KLHDC3Q9BQ90 382 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 TBL1XR1Q9BZK7 514 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 ADNPQ9H2P0 1102 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 BATF3Q9NR55 127 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 MYOTQ9UBF9 498 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 RNF6Q9Y252 685 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 PCSK5Q92824 1860 aa12.88□□□□□ -0.35
GPNMB-203ENST00000409458 A0A1W2PQ72 361 aa12.87□□□□□ -0.35
GPNMB-203ENST00000409458 SLC1A7O00341 560 aa12.87□□□□□ -0.35
GPNMB-203ENST00000409458 KPNA4O00629 521 aaPredicted RBP12.87□□□□□ -0.35
GPNMB-203ENST00000409458 ADAM10O14672 748 aa12.87□□□□□ -0.35
GPNMB-203ENST00000409458 SCO2O43819 266 aa12.87□□□□□ -0.35
GPNMB-203ENST00000409458 GSTM3P21266 225 aa12.87□□□□□ -0.35
GPNMB-203ENST00000409458 FPR3P25089 353 aa12.87□□□□□ -0.35
GPNMB-203ENST00000409458 FMO3P31513 532 aa12.87□□□□□ -0.35
GPNMB-203ENST00000409458 OTX2P32243 289 aa12.87□□□□□ -0.35
GPNMB-203ENST00000409458 IDH2P48735 452 aaKnown RBP12.87□□□□□ -0.35
GPNMB-203ENST00000409458 EFR3AQ14156 821 aa12.87□□□□□ -0.35
GPNMB-203ENST00000409458 ALG10BQ5I7T1 473 aa12.87□□□□□ -0.35
GPNMB-203ENST00000409458 RBM48Q5RL73 367 aaKnown RBP12.87□□□□□ -0.35
GPNMB-203ENST00000409458 PLAG1Q6DJT9 500 aa12.87□□□□□ -0.35
GPNMB-203ENST00000409458 LYPD8Q6UX82 237 aa12.87□□□□□ -0.35
GPNMB-203ENST00000409458 HGDQ93099 445 aa12.87□□□□□ -0.35
GPNMB-203ENST00000409458 ZNF524Q96C55 264 aa12.87□□□□□ -0.35
GPNMB-203ENST00000409458 SH3YL1Q96HL8 342 aaPredicted RBP12.87□□□□□ -0.35
GPNMB-203ENST00000409458 NODALQ96S42 347 aa12.87□□□□□ -0.35
GPNMB-203ENST00000409458 YTHDF1Q9BYJ9 559 aaKnown RBP12.87□□□□□ -0.35
GPNMB-203ENST00000409458 DEFB126Q9BYW3 111 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms