RNA–Protein interactions for RNA: ENST00000403076.5

SDC1-203, Transcript of syndecan 1, humanhuman

TSL 1 (best) BASIC

Gene SDC1, Length 1,523 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-203ENST00000403076 IFNA8P32881 189 aa16.48■□□□□ 0.23
SDC1-203ENST00000403076 SLC6A8P48029 635 aa16.48■□□□□ 0.23
SDC1-203ENST00000403076 ZNF136P52737 540 aa16.48■□□□□ 0.23
SDC1-203ENST00000403076 FOXK2Q01167 660 aa16.48■□□□□ 0.23
SDC1-203ENST00000403076 EPS8Q12929 822 aa16.48■□□□□ 0.23
SDC1-203ENST00000403076 INPP5JQ15735 1006 aaPredicted RBP16.48■□□□□ 0.23
SDC1-203ENST00000403076 PLEKHM3Q6ZWE6 761 aa16.48■□□□□ 0.23
SDC1-203ENST00000403076 GALNTL5Q7Z4T8 443 aa16.48■□□□□ 0.23
SDC1-203ENST00000403076 PLCZ1Q86YW0 608 aa16.48■□□□□ 0.23
SDC1-203ENST00000403076 PAPD5Q8NDF8 572 aaKnown RBP16.48■□□□□ 0.23
SDC1-203ENST00000403076 OR5W2Q8NH69 310 aa16.48■□□□□ 0.23
SDC1-203ENST00000403076 ZNF563Q8TA94 476 aa16.48■□□□□ 0.23
SDC1-203ENST00000403076 ZNF597Q96LX8 424 aa16.48■□□□□ 0.23
SDC1-203ENST00000403076 ZNF300Q96RE9 604 aaPredicted RBP16.48■□□□□ 0.23
SDC1-203ENST00000403076 ZNF559Q9BR84 538 aa16.48■□□□□ 0.23
SDC1-203ENST00000403076 PTGES2Q9H7Z7 377 aa16.48■□□□□ 0.23
SDC1-203ENST00000403076 TMEM27Q9HBJ8 222 aa16.48■□□□□ 0.23
SDC1-203ENST00000403076 CTPS2Q9NRF8 586 aa16.48■□□□□ 0.23
SDC1-203ENST00000403076 DEPPQ9NTK1 212 aa16.48■□□□□ 0.23
SDC1-203ENST00000403076 ARMC1Q9NVT9 282 aa16.48■□□□□ 0.23
SDC1-203ENST00000403076 RPS6KB2Q9UBS0 482 aa16.48■□□□□ 0.23
SDC1-203ENST00000403076 TESQ9UGI8 421 aaKnown RBP16.48■□□□□ 0.23
SDC1-203ENST00000403076 TRAV17A0A0B4J275 112 aa16.47■□□□□ 0.23
SDC1-203ENST00000403076 A0A0G2JMM0 328 aa16.47■□□□□ 0.23
SDC1-203ENST00000403076 A0A1W2PPB8 328 aa16.47■□□□□ 0.23
SDC1-203ENST00000403076 A0A1W2PRS3 328 aa16.47■□□□□ 0.23
SDC1-203ENST00000403076 KIR3DP1A8MWS1 328 aa16.47■□□□□ 0.23
SDC1-203ENST00000403076 GNGT2O14610 69 aa16.47■□□□□ 0.23
SDC1-203ENST00000403076 ADAM10O14672 748 aa16.47■□□□□ 0.23
SDC1-203ENST00000403076 NME2P1O60361 137 aa16.47■□□□□ 0.23
SDC1-203ENST00000403076 CDC40O60508 579 aaKnown RBP eCLIP16.47■□□□□ 0.234e-6■■■■□ 23.1
SDC1-203ENST00000403076 NME2P22392 152 aa16.47■□□□□ 0.23
SDC1-203ENST00000403076 ACAA2P42765 397 aaKnown RBP16.47■□□□□ 0.23
SDC1-203ENST00000403076 CBFBQ13951 182 aa16.47■□□□□ 0.23
SDC1-203ENST00000403076 NPTX1Q15818 432 aa16.47■□□□□ 0.23
SDC1-203ENST00000403076 IGFL3Q6UXB1 125 aa16.47■□□□□ 0.23
SDC1-203ENST00000403076 PIWIL3Q7Z3Z3 882 aaKnown RBP16.47■□□□□ 0.23
SDC1-203ENST00000403076 SULF2Q8IWU5 870 aa16.47■□□□□ 0.23
SDC1-203ENST00000403076 CADM2Q8N3J6 435 aa16.47■□□□□ 0.23
SDC1-203ENST00000403076 WDSUB1Q8N9V3 476 aa16.47■□□□□ 0.23
SDC1-203ENST00000403076 TMEM41AQ96HV5 264 aa16.47■□□□□ 0.23
SDC1-203ENST00000403076 FRMD6Q96NE9 622 aa16.47■□□□□ 0.23
SDC1-203ENST00000403076 TRIM2Q9C040 744 aa16.47■□□□□ 0.23
SDC1-203ENST00000403076 TUBA8Q9NY65 449 aaPredicted RBP16.47■□□□□ 0.23
SDC1-203ENST00000403076 NDUFAF4Q9P032 175 aa16.47■□□□□ 0.23
SDC1-203ENST00000403076 ICAM5Q9UMF0 924 aa16.47■□□□□ 0.23
SDC1-203ENST00000403076 NTNG1Q9Y2I2 539 aa16.47■□□□□ 0.23
SDC1-203ENST00000403076 CSAG2Q9Y5P2 127 aa16.47■□□□□ 0.23
SDC1-203ENST00000403076 CPSF4LA6NMK7 179 aaKnown RBP16.46■□□□□ 0.23
SDC1-203ENST00000403076 FAM47E-STBD1D6RA91 191 aa16.46■□□□□ 0.23
SDC1-203ENST00000403076 J3KTA2 159 aa16.46■□□□□ 0.23
SDC1-203ENST00000403076 SNPHO15079 494 aa16.46■□□□□ 0.23
SDC1-203ENST00000403076 TRIM3O75382 744 aaPredicted RBP16.46■□□□□ 0.23
SDC1-203ENST00000403076 BAG2O95816 211 aa16.46■□□□□ 0.23
SDC1-203ENST00000403076 CST1P01037 141 aa16.46■□□□□ 0.23
SDC1-203ENST00000403076 FCGR1AP12314 374 aa16.46■□□□□ 0.23
SDC1-203ENST00000403076 RHCEP18577 417 aa16.46■□□□□ 0.23
SDC1-203ENST00000403076 FASP25445 335 aa16.46■□□□□ 0.23
SDC1-203ENST00000403076 MAGEA2P43356 314 aa16.46■□□□□ 0.23
SDC1-203ENST00000403076 IDH2P48735 452 aaKnown RBP16.46■□□□□ 0.23
SDC1-203ENST00000403076 SUMO3P55854 103 aaPredicted RBP16.46■□□□□ 0.23
SDC1-203ENST00000403076 TAS2R41P59536 307 aa16.46■□□□□ 0.23
SDC1-203ENST00000403076 FOXD4Q12950 439 aaPredicted RBP16.46■□□□□ 0.23
SDC1-203ENST00000403076 KCNAB2Q13303 367 aa16.46■□□□□ 0.23
SDC1-203ENST00000403076 ENTPD8Q5MY95 495 aa16.46■□□□□ 0.23
SDC1-203ENST00000403076 TIGD3Q6B0B8 471 aa16.46■□□□□ 0.23
SDC1-203ENST00000403076 C19orf48Q6RUI8 117 aa16.46■□□□□ 0.23
SDC1-203ENST00000403076 OR2M7Q8NG81 312 aa16.46■□□□□ 0.23
SDC1-203ENST00000403076 RNF217Q8TC41 542 aa16.46■□□□□ 0.23
SDC1-203ENST00000403076 ZNF347Q96SE7 839 aa16.46■□□□□ 0.23
SDC1-203ENST00000403076 BOKQ9UMX3 212 aaPredicted RBP16.46■□□□□ 0.23
SDC1-203ENST00000403076 EML6Q6ZMW3 1958 aa16.46■□□□□ 0.23
SDC1-203ENST00000403076 CELSR3Q9NYQ7 3312 aa16.46■□□□□ 0.22
SDC1-203ENST00000403076 IGLV3-32A0A0A0MS00 114 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 ANKUB1A6NFN9 424 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 H3BNX3 289 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 TPST2O60704 377 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 DPM1O60762 260 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 FMO6PO60774 539 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 ADAM11O75078 769 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 PDGFAP04085 211 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 ELAVL4P26378 380 aaKnown RBP16.45■□□□□ 0.22
SDC1-203ENST00000403076 CD97P48960 835 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 MEOX1P50221 254 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 PLGLB1Q02325 96 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 PIN1Q13526 163 aaPredicted RBP16.45■□□□□ 0.22
SDC1-203ENST00000403076 GANABQ14697 944 aaKnown RBP16.45■□□□□ 0.22
SDC1-203ENST00000403076 RCN1Q15293 331 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 OR1Q1Q15612 314 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 TSEN54Q7Z6J9 526 aaKnown RBP16.45■□□□□ 0.22
SDC1-203ENST00000403076 OR2M3Q8NG83 312 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 GPR119Q8TDV5 335 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 SCMH1Q96GD3 660 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 GNRHR2Q96P88 292 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 PIP5K1AQ99755 562 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 FNDC11Q9BVV2 318 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 PRORYQ9H606 182 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 DCLRE1BQ9H816 532 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 SELENONQ9NZV5 590 aa16.45■□□□□ 0.22
SDC1-203ENST00000403076 FBXL2Q9UKC9 423 aa16.45■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 56.3 ms