RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 PYHIN1Q6K0P9 492 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 ZNF782Q6ZMW2 699 aaPredicted RBP17.28■□□□□ 0.36
USP48-204ENST00000400301 TMPRSS12Q86WS5 348 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 Q8N9G6 341 aaPredicted RBP17.28■□□□□ 0.36
USP48-204ENST00000400301 GPER1Q99527 375 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 CHST8Q9H2A9 424 aa17.28■□□□□ 0.36
USP48-204ENST00000400301 SOX1O00570 391 aaPredicted RBP17.27■□□□□ 0.36
USP48-204ENST00000400301 CCKBRP32239 447 aa17.27■□□□□ 0.36
USP48-204ENST00000400301 SF3A2Q15428 464 aaKnown RBP17.27■□□□□ 0.36
USP48-204ENST00000400301 TATDN3Q17R31 274 aa17.27■□□□□ 0.36
USP48-204ENST00000400301 PARM1Q6UWI2 310 aa17.27■□□□□ 0.36
USP48-204ENST00000400301 MCATQ8IVS2 390 aaKnown RBP17.27■□□□□ 0.36
USP48-204ENST00000400301 TXNDC15Q96J42 360 aa17.27■□□□□ 0.36
USP48-204ENST00000400301 FTSJ1Q9UET6 329 aa17.27■□□□□ 0.36
USP48-204ENST00000400301 PCDHGA3Q9Y5H0 932 aa17.27■□□□□ 0.36
USP48-204ENST00000400301 KIR2DS5A0A0G2JLQ3 304 aa17.27■□□□□ 0.36
USP48-204ENST00000400301 A0A0G2JNG1 304 aa17.27■□□□□ 0.36
USP48-204ENST00000400301 KIR2DS3K7RE56 304 aa17.27■□□□□ 0.36
USP48-204ENST00000400301 PRKCAP17252 672 aa17.27■□□□□ 0.36
USP48-204ENST00000400301 HTR1FP30939 366 aa17.27■□□□□ 0.36
USP48-204ENST00000400301 TGFBR2P37173 567 aa17.27■□□□□ 0.36
USP48-204ENST00000400301 ERV3-1Q14264 604 aa17.27■□□□□ 0.36
USP48-204ENST00000400301 KIR2DS5Q14953 304 aa17.27■□□□□ 0.36
USP48-204ENST00000400301 AGBL4Q5VU57 503 aa17.27■□□□□ 0.36
USP48-204ENST00000400301 PRAMEF8Q5VWM4 474 aa17.27■□□□□ 0.36
USP48-204ENST00000400301 PRAMEF7Q5VXH5 474 aa17.27■□□□□ 0.36
USP48-204ENST00000400301 SLC25A25Q6KCM7 469 aa17.27■□□□□ 0.36
USP48-204ENST00000400301 ANKRD54Q6NXT1 300 aa17.27■□□□□ 0.36
USP48-204ENST00000400301 NOXA1Q86UR1 476 aa17.27■□□□□ 0.36
USP48-204ENST00000400301 ZNF227Q86WZ6 799 aa17.27■□□□□ 0.36
USP48-204ENST00000400301 C15orf40Q8WUR7 153 aa17.27■□□□□ 0.36
USP48-204ENST00000400301 TESQ9UGI8 421 aaKnown RBP17.27■□□□□ 0.36
USP48-204ENST00000400301 KLHL21Q9UJP4 597 aa17.27■□□□□ 0.36
USP48-204ENST00000400301 SCO2O43819 266 aa17.27■□□□□ 0.35
USP48-204ENST00000400301 PROS1P07225 676 aa17.27■□□□□ 0.35
USP48-204ENST00000400301 ANXA3P12429 323 aa17.27■□□□□ 0.35
USP48-204ENST00000400301 TNFRSF4P43489 277 aa17.27■□□□□ 0.35
USP48-204ENST00000400301 ADPRHP54922 357 aa17.27■□□□□ 0.35
USP48-204ENST00000400301 TMEM69Q5SWH9 247 aa17.27■□□□□ 0.35
USP48-204ENST00000400301 ADGRF3Q8IZF5 1079 aa17.27■□□□□ 0.35
USP48-204ENST00000400301 RNF113BQ8IZP6 322 aaKnown RBP17.27■□□□□ 0.35
USP48-204ENST00000400301 CREB3L1Q96BA8 519 aa17.27■□□□□ 0.35
USP48-204ENST00000400301 THAP7Q9BT49 309 aaPredicted RBP17.27■□□□□ 0.35
USP48-204ENST00000400301 MKRN2Q9H000 416 aaKnown RBP17.27■□□□□ 0.35
USP48-204ENST00000400301 TTYH1Q9H313 450 aaPredicted RBP17.27■□□□□ 0.35
USP48-204ENST00000400301 ANKRD19PQ9H560 264 aa17.27■□□□□ 0.35
USP48-204ENST00000400301 MGAMO43451 1857 aa17.27■□□□□ 0.35
USP48-204ENST00000400301 TMEM129A0AVI4 362 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 PRAMEF26H0Y7S4 382 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 DRD5P21918 477 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 TEAD1P28347 426 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 PSMB10P40306 273 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 GDI2P50395 445 aaKnown RBP17.26■□□□□ 0.35
USP48-204ENST00000400301 PSPHP78330 225 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 CRMP1Q14194 572 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 HES5Q5TA89 166 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 MFSD4AQ8N468 514 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 JAGN1Q8N5M9 183 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 OR4C15Q8NGM1 316 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 TM9SF4Q92544 642 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 C11orf54Q9H0W9 315 aaPredicted RBP17.26■□□□□ 0.35
USP48-204ENST00000400301 NUDT15Q9NV35 164 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 LRRC37A2A6NM11 1700 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 CEACAM5P06731 702 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 EN2P19622 333 aaPredicted RBP17.26■□□□□ 0.35
USP48-204ENST00000400301 TGM4P49221 684 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 ERVK-25P63136 954 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 ULK3Q6PHR2 472 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 SLC35F2Q8IXU6 374 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 ZNF440Q8IYI8 595 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 OR7G2Q8NG99 324 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 FCAMRQ8WWV6 532 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 ZDHHC12Q96GR4 267 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 TNFRSF13CQ96RJ3 184 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 PELOQ9BRX2 385 aaKnown RBP17.26■□□□□ 0.35
USP48-204ENST00000400301 C8orf33Q9H7E9 229 aaPredicted RBP17.26■□□□□ 0.35
USP48-204ENST00000400301 SIAEQ9HAT2 523 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 NDUFB11Q9NX14 153 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 ZNF224Q9NZL3 707 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 ASB4Q9Y574 426 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 PAPLNO95428 1278 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 SPARCP09486 303 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 H2AFB2P0C5Z0 115 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 HMGA2P52926 109 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 PCBP3P57721 371 aaKnown RBP17.26■□□□□ 0.35
USP48-204ENST00000400301 ZXDCQ2QGD7 858 aaPredicted RBP17.26■□□□□ 0.35
USP48-204ENST00000400301 C4orf46Q504U0 113 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 C1orf94Q6P1W5 598 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 DNAJA4Q8WW22 397 aaPredicted RBP17.26■□□□□ 0.35
USP48-204ENST00000400301 SLC25A46Q96AG3 418 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 B3GNT4Q9C0J1 378 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 ATP13A2Q9NQ11 1180 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 UGT2A1Q9Y4X1 527 aa17.26■□□□□ 0.35
USP48-204ENST00000400301 ZNF236Q9UL36 1845 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 TRPM6Q9BX84 2022 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 POLR1CO15160 346 aaPredicted RBP17.25■□□□□ 0.35
USP48-204ENST00000400301 TOXO94900 526 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 ZNF81P51508 661 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 ADAM8P78325 824 aa17.25■□□□□ 0.35
USP48-204ENST00000400301 ATAD3CQ5T2N8 411 aa17.25■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms