RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 UBTFL6P0CB48 400 aaPredicted RBP19.61■□□□□ 0.73
CLN3-207ENST00000395653 PSMA4P25789 261 aaKnown RBP19.61■□□□□ 0.73
CLN3-207ENST00000395653 EIF1P41567 113 aaKnown RBP19.61■□□□□ 0.73
CLN3-207ENST00000395653 KCNJ10P78508 379 aa19.61■□□□□ 0.73
CLN3-207ENST00000395653 SRYQ05066 204 aa19.61■□□□□ 0.73
CLN3-207ENST00000395653 ART3Q13508 389 aa19.61■□□□□ 0.73
CLN3-207ENST00000395653 CBFBQ13951 182 aa19.61■□□□□ 0.73
CLN3-207ENST00000395653 NFYCQ13952 458 aa19.61■□□□□ 0.73
CLN3-207ENST00000395653 RIPPLY2Q5TAB7 128 aa19.61■□□□□ 0.73
CLN3-207ENST00000395653 PRAMEF8Q5VWM4 474 aa19.61■□□□□ 0.73
CLN3-207ENST00000395653 PRAMEF7Q5VXH5 474 aa19.61■□□□□ 0.73
CLN3-207ENST00000395653 MAMDC2Q7Z304 686 aaPredicted RBP19.61■□□□□ 0.73
CLN3-207ENST00000395653 PEX5LQ8IYB4 626 aa19.61■□□□□ 0.73
CLN3-207ENST00000395653 METTL25Q8N6Q8 603 aa19.61■□□□□ 0.73
CLN3-207ENST00000395653 ASB5Q8WWX0 329 aa19.61■□□□□ 0.73
CLN3-207ENST00000395653 SDCCAG3Q96C92 435 aa19.61■□□□□ 0.73
CLN3-207ENST00000395653 ANKRD27Q96NW4 1050 aa19.61■□□□□ 0.73
CLN3-207ENST00000395653 CGREF1Q99674 301 aa19.61■□□□□ 0.73
CLN3-207ENST00000395653 TREX2Q9BQ50 279 aaPredicted RBP19.61■□□□□ 0.73
CLN3-207ENST00000395653 ELAC2Q9BQ52 826 aaKnown RBP19.61■□□□□ 0.73
CLN3-207ENST00000395653 CPPED1Q9BRF8 314 aaPredicted RBP19.61■□□□□ 0.73
CLN3-207ENST00000395653 IKZF5Q9H5V7 419 aa19.61■□□□□ 0.73
CLN3-207ENST00000395653 RNF6Q9Y252 685 aa19.61■□□□□ 0.73
CLN3-207ENST00000395653 CAPN7Q9Y6W3 813 aa19.61■□□□□ 0.73
CLN3-207ENST00000395653 A0A0G2JPF8 293 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 GMNCA6NCL1 334 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 BBIP1A8MTZ0 92 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 HNRNPCL2B2RXH8 293 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 HNRNPCL3B7ZW38 293 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 SHISA8B8ZZ34 492 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 H3BML4 177 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 FBP2O00757 339 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 HNRNPCL1O60812 293 aaKnown RBP19.6■□□□□ 0.73
CLN3-207ENST00000395653 CCDC22O60826 627 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 HNRNPCL4P0DMR1 293 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 IL7RP16871 459 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 ADH6P28332 368 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 CCR4P51679 360 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 GNGT1P63211 74 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 GCNT6Q5T4J0 391 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 SEM1Q6ZVN7 128 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 HMGN2P46Q86SG4 172 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 ADGRE4PQ86SQ3 457 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 C10orf111Q8N326 155 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 MEIOBQ8N635 442 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 WDR60Q8WVS4 1066 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 RNF145Q96MT1 663 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 TRIB1Q96RU8 372 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 TUBA1CQ9BQE3 449 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 CALHM2Q9HA72 323 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 BCL2L10Q9HD36 194 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 EXOSC3Q9NQT5 275 aaKnown RBP19.6■□□□□ 0.73
CLN3-207ENST00000395653 STOML1Q9UBI4 398 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 PLEKHB1Q9UF11 243 aaPredicted RBP19.6■□□□□ 0.73
CLN3-207ENST00000395653 GPC6Q9Y625 555 aaPredicted RBP19.6■□□□□ 0.73
CLN3-207ENST00000395653 PCNX1Q96RV3 2341 aa19.6■□□□□ 0.73
CLN3-207ENST00000395653 CYP7B1O75881 506 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 CLDN14O95500 239 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 NID1P14543 1247 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 DRD4P21917 467 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 ELK4P28324 431 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 EEFSECP57772 596 aaKnown RBP19.59■□□□□ 0.73
CLN3-207ENST00000395653 FOXF1Q12946 379 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 TRMT5Q32P41 509 aaKnown RBP19.59■□□□□ 0.73
CLN3-207ENST00000395653 OR10Q1Q8NGQ4 319 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 POC1BQ8TC44 478 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 MAL2Q969L2 176 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 UCN2Q96RP3 112 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 NPAS1Q99742 590 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 TMEM38AQ9H6F2 299 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 KLF2Q9Y5W3 355 aaPredicted RBP19.59■□□□□ 0.73
CLN3-207ENST00000395653 ICE1Q9Y2F5 2266 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 MBD3L4A6NDZ8 208 aaPredicted RBP19.59■□□□□ 0.73
CLN3-207ENST00000395653 MBD3L3A6NE82 208 aaPredicted RBP19.59■□□□□ 0.73
CLN3-207ENST00000395653 MBD3L5A6NJ08 208 aaPredicted RBP19.59■□□□□ 0.73
CLN3-207ENST00000395653 CLDN24A6NM45 220 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 KDM4EB2RXH2 506 aaPredicted RBP19.59■□□□□ 0.73
CLN3-207ENST00000395653 ETV2O00321 342 aaPredicted RBP19.59■□□□□ 0.73
CLN3-207ENST00000395653 ARAFP10398 606 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 PRKCAP17252 672 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 PGCP20142 388 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 CHRNB4P30926 498 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 TIMP3P35625 211 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 PLAURQ03405 335 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 TOMM34Q15785 309 aaPredicted RBP19.59■□□□□ 0.73
CLN3-207ENST00000395653 MMEL1Q495T6 779 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 SLC25A53Q5H9E4 307 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 RPS26P11Q5JNZ5 115 aaPredicted RBP19.59■□□□□ 0.73
CLN3-207ENST00000395653 CPLX4Q7Z7G2 160 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 SNX32Q86XE0 403 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 UBQLNLQ8IYU4 475 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 OR52P1PQ8NH57 321 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 MBD3L2Q8NHZ7 208 aaPredicted RBP19.59■□□□□ 0.73
CLN3-207ENST00000395653 BBS10Q8TAM1 723 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 CA5BP1Q8WTZ4 195 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 MRGPRX4Q96LA9 322 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 THUMPD3Q9BV44 507 aaKnown RBP19.59■□□□□ 0.73
CLN3-207ENST00000395653 FAM107BQ9H098 131 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 ARMCX1Q9P291 453 aa19.59■□□□□ 0.73
CLN3-207ENST00000395653 TNFSF12-TNFSF13A0A0A6YY99 330 aa19.58■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms