RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 NDRG2Q9UN36 371 aaKnown RBP11.17□□□□□ -0.62
SYNPO-202ENST00000394243 TP53TG5Q9Y2B4 290 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 SNRPBP14678 240 aaKnown RBP11.17□□□□□ -0.62
SYNPO-202ENST00000394243 CATSPEREQ5SY80 951 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 KREMEN2Q8NCW0 462 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 SCARB1Q8WTV0 552 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 RAB39BQ96DA2 213 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 IER3IP1Q9Y5U9 82 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 A6NLC8 198 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 HEXBP07686 556 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 GABRA5P31644 462 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 RNF111Q6ZNA4 994 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 DCAF4L2Q8NA75 395 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 OR10R2Q8NGX6 335 aa11.17□□□□□ -0.62
SYNPO-202ENST00000394243 BSCL2Q96G97 398 aaPredicted RBP11.17□□□□□ -0.62
SYNPO-202ENST00000394243 ZNF230Q9UIE0 474 aaPredicted RBP11.17□□□□□ -0.62
SYNPO-202ENST00000394243 FRS3O43559 492 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 GPR37L1O60883 481 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 KCNK2O95069 426 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 EGFP01133 1207 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 RAB40ALP0C0E4 278 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 CCR6P51684 374 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 FRMD1Q8N878 549 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 RAB40AQ8WXH6 277 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 KLRG1Q96E93 195 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 OR1F2PQ96R84 312 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 SOCS5O75159 536 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 RPS25P62851 125 aaKnown RBP11.16□□□□□ -0.62
SYNPO-202ENST00000394243 SCAPQ12770 1279 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 MLC1Q15049 377 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 BAK1Q16611 211 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 NANPQ8TBE9 248 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 C12orf42Q96LP6 360 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 C1orf74Q96LT6 269 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 LDAHQ9H6V9 325 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 TMPRSS11EQ9UL52 423 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 GPR45Q9Y5Y3 372 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 PTHP01270 115 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 ADRB1P08588 477 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 ACP2P11117 423 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 CPOXP36551 454 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 GHRHRQ02643 423 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 FRMPD2BQ6IN97 320 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 SKA3Q8IX90 412 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 TMEM102Q8N9M5 508 aaPredicted RBP11.16□□□□□ -0.62
SYNPO-202ENST00000394243 OR2T11Q8NH01 316 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 TMEM163Q8TC26 289 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 RADILQ96JH8 1075 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 C3orf30Q96M34 536 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 NICN1Q9BSH3 213 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 ZNF768Q9H5H4 540 aaKnown RBP11.16□□□□□ -0.62
SYNPO-202ENST00000394243 ZCWPW2A0A1B0GU75 182 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 PNPP00491 289 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 ADH5P11766 374 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 TNK1Q13470 666 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 TPRA1Q86W33 373 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 IL17RCQ8NAC3 791 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 OR8J2Q8NGG1 315 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 OR6F1Q8NGZ6 308 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 CPT2P23786 658 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 GABRR1P24046 479 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 POLR2IP36954 125 aaKnown RBP11.16□□□□□ -0.62
SYNPO-202ENST00000394243 TAS2R30P59541 319 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 ERN2Q76MJ5 926 aaKnown RBP11.16□□□□□ -0.62
SYNPO-202ENST00000394243 SENP5Q96HI0 755 aaPredicted RBP11.16□□□□□ -0.62
SYNPO-202ENST00000394243 ACTRT3Q9BYD9 372 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 EMCNQ9ULC0 261 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 FBXO7Q9Y3I1 522 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 EDDM13A0A1B0GTR0 161 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 C9J4A7 227 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 H0Y8G0 127 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 HAPLN1P10915 354 aaPredicted RBP11.16□□□□□ -0.62
SYNPO-202ENST00000394243 CCINQ13939 588 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 RAB6CQ53S08 254 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 B3GLCTQ6Y288 498 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 TMUB2Q71RG4 321 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 SLAIN1Q8ND83 568 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 SLC7A6Q92536 515 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 ZNF582Q96NG8 517 aaPredicted RBP11.16□□□□□ -0.62
SYNPO-202ENST00000394243 PTCHD1Q96NR3 888 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 NIPSNAP3BQ9BS92 247 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 RAB6CQ9H0N0 254 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 HAO2Q9NYQ3 351 aa11.16□□□□□ -0.62
SYNPO-202ENST00000394243 ABCC6O95255 1503 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 PGCP20142 388 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 OMGP23515 440 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 BDH1Q02338 343 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 ECH1Q13011 328 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 MALLQ13021 153 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 ZNF704Q6ZNC4 412 aaPredicted RBP11.15□□□□□ -0.62
SYNPO-202ENST00000394243 SIAH3Q8IW03 269 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 THAP3Q8WTV1 239 aaPredicted RBP11.15□□□□□ -0.62
SYNPO-202ENST00000394243 CERS4Q9HA82 394 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 KLHL13Q9P2N7 655 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 BTNL2Q9UIR0 455 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 C20orf202A1L168 122 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 J3KTA2 159 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 CNR1P21554 472 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 IRF4Q15306 451 aa11.15□□□□□ -0.62
SYNPO-202ENST00000394243 USP50Q70EL3 339 aaPredicted RBP11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms