RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 MTCH2Q9Y6C9 303 aa8.98□□□□□ -0.97
COL6A3-204ENST00000392003 COL4A3Q01955 1670 aa8.98□□□□□ -0.97
COL6A3-204ENST00000392003 TEX51A0A1B0GUA7 166 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 ZNF860A6NHJ4 632 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 SERPINI2O75830 405 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 FPR3P25089 353 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 ETV6P41212 452 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 BTN1A1Q13410 526 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 COL9A2Q14055 689 aaPredicted RBP8.97□□□□□ -0.97
COL6A3-204ENST00000392003 PDSS1Q5T2R2 415 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 ARMC6Q6NXE6 501 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 FAM111BQ6SJ93 734 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 OOSP2Q86WS3 158 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 CDK20Q8IZL9 346 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 OR52L1Q8NGH7 329 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 FAM131CQ96AQ9 280 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 CCDC3Q9BQI4 270 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 TESQ9UGI8 421 aaKnown RBP8.97□□□□□ -0.97
COL6A3-204ENST00000392003 DAPP1Q9UN19 280 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 CMAHPQ9Y471 501 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 MDC1Q14676 2089 aaKnown RBP8.97□□□□□ -0.97
COL6A3-204ENST00000392003 SCN3AQ9NY46 2000 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 TMEM129A0AVI4 362 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 IL1AP01583 271 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 CPMP14384 443 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 CPEP16870 476 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 ID2Q02363 134 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 ARHGAP11BQ3KRB8 267 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 C22orf42Q6IC83 251 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 SLC30A6Q6NXT4 461 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 FRRS1Q6ZNA5 592 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 MBOAT2Q6ZWT7 520 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 GDF7Q7Z4P5 450 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 NKAIN4Q8IVV8 208 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 COX18Q8N8Q8 333 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 TSTD1Q8NFU3 115 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 GATAD2BQ8WXI9 593 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 C10orf90Q96M02 699 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 ISYNA1Q9NPH2 558 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 TNFRSF10DQ9UBN6 386 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 ZNF221Q9UK13 617 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 MMP17Q9ULZ9 603 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 CDH23Q9H251 3354 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 C2orf74A8MZ97 194 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 CHST10O43529 356 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 NARSO43776 548 aaKnown RBP8.97□□□□□ -0.97
COL6A3-204ENST00000392003 STX11O75558 287 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 TNFP01375 233 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 PDGFAP04085 211 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 OMPP47874 163 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 CASP6P55212 293 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 YPEL5P62699 121 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 RUNX2Q13950 521 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 DSG2Q14126 1118 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 UBXN2BQ14CS0 331 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 ESCO2Q56NI9 601 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 OR2G6Q5TZ20 316 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 HEPHL1Q6MZM0 1159 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 USP53Q70EK8 1073 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 CELF2-AS1Q8N7Q2 184 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 OR2T33Q8NG76 320 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 OR52H1Q8NGJ2 320 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 AP3S1Q92572 193 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 MSLNLQ96KJ4 702 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 BMFQ96LC9 184 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 OR2A14Q96R47 310 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 OR2A5Q96R48 311 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 PIGUQ9H490 435 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 C6orf106Q9H6K1 298 aaPredicted RBP8.97□□□□□ -0.97
COL6A3-204ENST00000392003 SYNPO2LQ9H987 977 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 MED17Q9NVC6 651 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 MRPS18AQ9NVS2 196 aaKnown RBP8.97□□□□□ -0.97
COL6A3-204ENST00000392003 TXNL4BQ9NX01 149 aaKnown RBP8.97□□□□□ -0.97
COL6A3-204ENST00000392003 ERVK13-1Q9NX77 482 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 SLC7A7Q9UM01 511 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 ENTPD2Q9Y5L3 495 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 TRANK1O15050 2925 aa8.97□□□□□ -0.97
COL6A3-204ENST00000392003 I3L521 148 aa8.96□□□□□ -0.97
COL6A3-204ENST00000392003 AGRPO00253 132 aa8.96□□□□□ -0.97
COL6A3-204ENST00000392003 DBIP07108 87 aaKnown RBP8.96□□□□□ -0.97
COL6A3-204ENST00000392003 BMP7P18075 431 aa8.96□□□□□ -0.97
COL6A3-204ENST00000392003 HK1P19367 917 aa8.96□□□□□ -0.97
COL6A3-204ENST00000392003 PAICSP22234 425 aaKnown RBP8.96□□□□□ -0.97
COL6A3-204ENST00000392003 TRHRP34981 398 aaPredicted RBP8.96□□□□□ -0.97
COL6A3-204ENST00000392003 SSPNQ14714 243 aa8.96□□□□□ -0.97
COL6A3-204ENST00000392003 MFSD13AQ14CX5 517 aa8.96□□□□□ -0.97
COL6A3-204ENST00000392003 DUSP5Q16690 384 aa8.96□□□□□ -0.97
COL6A3-204ENST00000392003 PGGHGQ32M88 737 aa8.96□□□□□ -0.97
COL6A3-204ENST00000392003 PLK5Q496M5 336 aa8.96□□□□□ -0.97
COL6A3-204ENST00000392003 LHFPL3Q86UP9 236 aa8.96□□□□□ -0.97
COL6A3-204ENST00000392003 OR2L13Q8N349 312 aa8.96□□□□□ -0.97
COL6A3-204ENST00000392003 KLHL36Q8N4N3 616 aa8.96□□□□□ -0.97
COL6A3-204ENST00000392003 OR4M1Q8NGD0 313 aa8.96□□□□□ -0.97
COL6A3-204ENST00000392003 OR8D4Q8NGM9 314 aa8.96□□□□□ -0.97
COL6A3-204ENST00000392003 C14orf119Q9NWQ9 140 aa8.96□□□□□ -0.97
COL6A3-204ENST00000392003 KCMF1Q9P0J7 381 aa8.96□□□□□ -0.97
COL6A3-204ENST00000392003 FBXL21Q9UKT6 434 aa8.96□□□□□ -0.97
COL6A3-204ENST00000392003 NTNG1Q9Y2I2 539 aa8.96□□□□□ -0.97
COL6A3-204ENST00000392003 CDH10Q9Y6N8 788 aa8.96□□□□□ -0.97
COL6A3-204ENST00000392003 TRAPPC13A5PLN9 417 aa8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms