RNA–Protein interactions for RNA: ENST00000381150.5

SDC1-202, Transcript of syndecan 1, humanhuman

APPRIS P1 TSL 5 BASIC

Gene SDC1, Length 3,291 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-202ENST00000381150 ADAMTS14Q8WXS8 1223 aa12.91□□□□□ -0.34
SDC1-202ENST00000381150 MARVELD3Q96A59 401 aa12.91□□□□□ -0.34
SDC1-202ENST00000381150 COL26A1Q96A83 441 aa12.91□□□□□ -0.34
SDC1-202ENST00000381150 SLC35G5Q96KT7 338 aa12.91□□□□□ -0.34
SDC1-202ENST00000381150 BBS4Q96RK4 519 aa12.91□□□□□ -0.34
SDC1-202ENST00000381150 LRRN3Q9H3W5 708 aa12.91□□□□□ -0.34
SDC1-202ENST00000381150 CA10Q9NS85 328 aa12.91□□□□□ -0.34
SDC1-202ENST00000381150 LYARQ9NX58 379 aaKnown RBP12.91□□□□□ -0.34
SDC1-202ENST00000381150 PCDHGA9Q9Y5G4 932 aaKnown RBP12.91□□□□□ -0.34
SDC1-202ENST00000381150 MEIKINA0A087WXM9 373 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 K7ESM1 405 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 PSMD9O00233 223 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 PPM1DO15297 605 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 CXCL2P19875 107 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 HSD3B2P26439 372 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 HCCSP53701 268 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 RIN1Q13671 783 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 HES5Q5TA89 166 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 FAM71E1Q6IPT2 247 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 ACBD7Q8N6N7 88 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 OR5W2Q8NH69 310 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 SMPDL3AQ92484 453 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 NXPE3Q969Y0 559 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 CHFRQ96EP1 664 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 DTD2Q96FN9 168 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 P2RX2Q9UBL9 471 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 SLC27A6Q9Y2P4 619 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 NUP210Q8TEM1 1887 aaPredicted RBP12.9□□□□□ -0.34
SDC1-202ENST00000381150 KIAA0100Q14667 2235 aaKnown RBP12.9□□□□□ -0.34
SDC1-202ENST00000381150 C7orf66A4D0T2 115 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 PRRT4C9JH25 899 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 C1orf105O95561 183 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 HNRNPA1P09651 372 aaKnown RBP eCLIP12.9□□□□□ -0.34
SDC1-202ENST00000381150 ZP3P21754 424 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 ATP5A1P25705 553 aaKnown RBP12.9□□□□□ -0.34
SDC1-202ENST00000381150 NOS3P29474 1203 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 CTNNB1P35222 781 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 ZNF155Q12901 538 aaPredicted RBP12.9□□□□□ -0.34
SDC1-202ENST00000381150 GAB4Q2WGN9 574 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 CAMKMTQ7Z624 323 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 NKAIN4Q8IVV8 208 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 ETFBKMTQ8IXQ9 262 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 HINT3Q9NQE9 182 aaKnown RBP12.9□□□□□ -0.34
SDC1-202ENST00000381150 POMT2Q9UKY4 750 aa12.9□□□□□ -0.34
SDC1-202ENST00000381150 RP2O75695 350 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 EGFP01133 1207 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 NPPBP16860 134 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 C4BPBP20851 252 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 NFYAP23511 347 aaPredicted RBP12.89□□□□□ -0.35
SDC1-202ENST00000381150 ATXN7L3Q14CW9 347 aaPredicted RBP12.89□□□□□ -0.35
SDC1-202ENST00000381150 ZNF311Q5JNZ3 666 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 APOOLQ6UXV4 268 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 VRK2Q86Y07 508 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 LRRC56Q8IYG6 542 aaPredicted RBP12.89□□□□□ -0.35
SDC1-202ENST00000381150 THAP4Q8WY91 577 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 ACOT12Q8WYK0 555 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 RAD51AP1Q96B01 352 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 BABAM2Q9NXR7 383 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 KLK11Q9UBX7 282 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 GPR160Q9UJ42 338 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 ASF1AQ9Y294 204 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 IRGMA1A4Y4 181 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 OTOL1A6NHN0 477 aaPredicted RBP12.89□□□□□ -0.35
SDC1-202ENST00000381150 FAM74A7A6NL05 159 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 PEX14O75381 377 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 KLHL18O94889 574 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 C1GALT1C1LP0DN25 315 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 RAB3BP20337 219 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 RBMS1P29558 406 aaKnown RBP12.89□□□□□ -0.35
SDC1-202ENST00000381150 RPL3P39023 403 aaKnown RBP12.89□□□□□ -0.35
SDC1-202ENST00000381150 CLDN2P57739 230 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 SLC36A2Q495M3 483 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 LRRC37A5PQ49AS3 106 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 FAM74A3Q4VXF1 159 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 ACSM3Q53FZ2 586 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 LINC00518Q8N0U6 118 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 ARIH2OSQ8N7S6 290 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 C17orf47Q8NEP4 570 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 OR4Q3Q8NH05 313 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 CNOT9Q92600 299 aaKnown RBP12.89□□□□□ -0.35
SDC1-202ENST00000381150 YIPF5Q969M3 257 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 C16orf58Q96GQ5 468 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 C12orf57Q99622 126 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 TMEM168Q9H0V1 697 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 SLC25A18Q9H1K4 315 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 TRIM36Q9NQ86 728 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 ACSL5Q9ULC5 683 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 PAPLNO95428 1278 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 NPR2P20594 1047 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 NCBP2P52298 156 aaKnown RBP eCLIP12.89□□□□□ -0.35
SDC1-202ENST00000381150 RGS8P57771 180 aaPredicted RBP12.89□□□□□ -0.35
SDC1-202ENST00000381150 CDK5Q00535 292 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 BEX5Q5H9J7 111 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 C9orf64Q5T6V5 341 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 DGLUCYQ7Z3D6 616 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 ZNF547Q8IVP9 402 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 SLITRK4Q8IW52 837 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 CCDC116Q8IYX3 515 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 TTLQ8NG68 377 aa12.89□□□□□ -0.35
SDC1-202ENST00000381150 OR56B4Q8NH76 319 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms