RNA–Protein interactions for RNA: ENST00000377797.7

TCOF1-202, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 5,095 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-202ENST00000377797 WNT3P56703 355 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 ERVK-25P63136 954 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 DCDP81605 110 aaKnown RBP13.5□□□□□ -0.25
TCOF1-202ENST00000377797 ILKQ13418 452 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 ASB18Q6ZVZ8 466 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 MED25Q71SY5 747 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 AKAP14Q86UN6 197 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 PNPLA2Q96AD5 504 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 TIGARQ9NQ88 270 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 PRDM9Q9NQV7 894 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 PRDM7Q9NQW5 492 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 KLHL21Q9UJP4 597 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 ZNF222Q9UK12 451 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 SH3PXD2BA1X283 911 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 SERINC4A6NH21 518 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 PRAMEF4O60810 478 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 EFR3AQ14156 821 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 FZD2Q14332 565 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 ANKDD1AQ495B1 522 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 PRAMEF9Q5VWM5 478 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 WBP2NLQ6ICG8 309 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 TMPRSS9Q7Z410 1059 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 DNAJC22Q8N4W6 341 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 JAGN1Q8N5M9 183 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 OR13C2Q8NGS9 318 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP13.5□□□□□ -0.25
TCOF1-202ENST00000377797 CLEC4MQ9H2X3 399 aaPredicted RBP13.5□□□□□ -0.25
TCOF1-202ENST00000377797 ACER3Q9NUN7 267 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 POMT2Q9UKY4 750 aa13.5□□□□□ -0.25
TCOF1-202ENST00000377797 KRBA1A5PL33 1030 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 OR2T1O43869 369 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 NSA2O95478 260 aaKnown RBP13.49□□□□□ -0.25
TCOF1-202ENST00000377797 PAPD4Q6PIY7 484 aaKnown RBP13.49□□□□□ -0.25
TCOF1-202ENST00000377797 PIWIL3Q7Z3Z3 882 aaKnown RBP13.49□□□□□ -0.25
TCOF1-202ENST00000377797 CDH24Q86UP0 819 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 RCBTB1Q8NDN9 531 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 NEK7Q8TDX7 302 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 LCORQ96JN0 433 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-202ENST00000377797 SLC46A1Q96NT5 459 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 OR2A14Q96R47 310 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 NRSN2Q9GZP1 204 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 LDAHQ9H6V9 325 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 ASB6Q9NWX5 421 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 A0A0A6YYD5 115 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 LGI1O95970 557 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 IFNA6P05013 189 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 ITGA3P26006 1051 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 SFTPDP35247 375 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 SOX3P41225 446 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 ZNF793Q6ZN11 406 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 CAMKMTQ7Z624 323 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 AMER3Q8N944 861 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 HHATLQ9HCP6 504 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 WDR81Q562E7 1941 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 AHCTF1Q8WYP5 2266 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 A0A1B0GX78 115 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 A0A1W2PQF6 199 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 NPIPA2E9PIF3 369 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 NPIPA3F8WFD2 350 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 HCRTR1O43613 425 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 MAPK3P27361 379 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-202ENST00000377797 AP3S2P59780 193 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 ACTA2P62736 377 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 ACTG2P63267 376 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 CARD17Q5XLA6 110 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 FBXO42Q6P3S6 717 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 BORAQ6PGQ7 559 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 TMEM163Q8TC26 289 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 ZNF578Q96N58 590 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-202ENST00000377797 CTRCQ99895 268 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 OR51E2Q9H255 320 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 A0A1B0GWA3 101 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 OR2A25A4D2G3 310 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 UPK1AO00322 258 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 TRHRP34981 398 aaPredicted RBP13.49□□□□□ -0.25
TCOF1-202ENST00000377797 EEF1A2Q05639 463 aaKnown RBP13.49□□□□□ -0.25
TCOF1-202ENST00000377797 RAB40BQ12829 278 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 CSF3RQ99062 836 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 ULBP3Q9BZM4 244 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 SIDT1Q9NXL6 827 aaKnown RBP13.49□□□□□ -0.25
TCOF1-202ENST00000377797 CMAHPQ9Y471 501 aa13.49□□□□□ -0.25
TCOF1-202ENST00000377797 ANK1P16157 1881 aa13.48□□□□□ -0.25
TCOF1-202ENST00000377797 ZNF701M0R085 212 aaPredicted RBP13.48□□□□□ -0.25
TCOF1-202ENST00000377797 SEC14L5O43304 696 aa13.48□□□□□ -0.25
TCOF1-202ENST00000377797 ECDO95905 644 aaPredicted RBP13.48□□□□□ -0.25
TCOF1-202ENST00000377797 TFPTP0C1Z6 253 aa13.48□□□□□ -0.25
TCOF1-202ENST00000377797 IL9P15248 144 aa13.48□□□□□ -0.25
TCOF1-202ENST00000377797 NME1P15531 152 aaKnown RBP13.48□□□□□ -0.25
TCOF1-202ENST00000377797 TFF2Q03403 129 aa13.48□□□□□ -0.25
TCOF1-202ENST00000377797 TLE3Q04726 772 aa13.48□□□□□ -0.25
TCOF1-202ENST00000377797 MFSD13AQ14CX5 517 aa13.48□□□□□ -0.25
TCOF1-202ENST00000377797 TBCEQ15813 527 aaPredicted RBP13.48□□□□□ -0.25
TCOF1-202ENST00000377797 PRAMEF8Q5VWM4 474 aa13.48□□□□□ -0.25
TCOF1-202ENST00000377797 PRAMEF7Q5VXH5 474 aa13.48□□□□□ -0.25
TCOF1-202ENST00000377797 CALHM3Q86XJ0 350 aa13.48□□□□□ -0.25
TCOF1-202ENST00000377797 ENTHD1Q8IYW4 607 aa13.48□□□□□ -0.25
TCOF1-202ENST00000377797 RNF113BQ8IZP6 322 aaKnown RBP13.48□□□□□ -0.25
TCOF1-202ENST00000377797 CNOT9Q92600 299 aaKnown RBP13.48□□□□□ -0.25
TCOF1-202ENST00000377797 ALG8Q9BVK2 526 aa13.48□□□□□ -0.25
TCOF1-202ENST00000377797 NAA50Q9GZZ1 169 aaKnown RBP13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms