RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 CDKN2DP55273 166 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 RBPJQ06330 500 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 SQSTM1Q13501 440 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 IL17RDQ8NFM7 739 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 NDNFQ8TB73 568 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 MITD1Q8WV92 249 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 LPAR4Q99677 370 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 FANCGO15287 622 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 KCMF1Q9P0J7 381 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 ZNF791Q3KP31 576 aaPredicted RBP11.77□□□□□ -0.53
VPS13A-204ENST00000376634 TXNRD3NBQ6F5E7 133 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 METTL4Q8N3J2 472 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 TRUB1Q8WWH5 349 aaKnown RBP11.77□□□□□ -0.53
VPS13A-204ENST00000376634 MRGPRX2Q96LB1 330 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 SORCS2Q96PQ0 1159 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 NICN1Q9BSH3 213 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 SACM1LQ9NTJ5 587 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 SLC35A3Q9Y2D2 325 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 ZNF217O75362 1048 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 PTHP01270 115 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 UBBP0CG47 229 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 UBCP0CG48 685 aaKnown RBP11.77□□□□□ -0.53
VPS13A-204ENST00000376634 STT3AP46977 705 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 RPS27AP62979 156 aaKnown RBP11.77□□□□□ -0.53
VPS13A-204ENST00000376634 UBA52P62987 128 aaKnown RBP11.77□□□□□ -0.53
VPS13A-204ENST00000376634 GRB7Q14451 532 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 FAM69AQ5T7M9 428 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 GPR148Q8TDV2 347 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 PINK1Q9BXM7 581 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 FN3KRPQ9HA64 309 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 HRASLSQ9HDD0 168 aa11.77□□□□□ -0.53
VPS13A-204ENST00000376634 SEMA4FO95754 770 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 SERPINF1P36955 418 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 COMMD6Q7Z4G1 85 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 ZNF417Q8TAU3 575 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 NT5C3BQ969T7 300 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 FEVQ99581 238 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 CHRDQ9H2X0 955 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 HEBP1Q9NRV9 189 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 NLKQ9UBE8 527 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 B4DXG7 233 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 IMPA2O14732 288 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 FGF3P11487 239 aaPredicted RBP11.76□□□□□ -0.53
VPS13A-204ENST00000376634 EFNA3P52797 238 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 SFRP4Q6FHJ7 346 aaPredicted RBP11.76□□□□□ -0.53
VPS13A-204ENST00000376634 AMDHD1Q96NU7 426 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 SLC7A7Q9UM01 511 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 RAB3DO95716 219 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 IL1RNP18510 177 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 PKDCCQ504Y2 493 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 BRICD5Q6PL45 260 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 CCDC71Q8IV32 467 aaPredicted RBP11.76□□□□□ -0.53
VPS13A-204ENST00000376634 MINDY1Q8N5J2 469 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 RANBP9Q96S59 729 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 COQ3Q9NZJ6 369 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 SGCEO43556 437 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 ZIC2O95409 532 aaPredicted RBP11.76□□□□□ -0.53
VPS13A-204ENST00000376634 OR2A12Q8NGT7 310 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 FAM71F1Q96KD3 344 aaPredicted RBP11.76□□□□□ -0.53
VPS13A-204ENST00000376634 GLTPQ9NZD2 209 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 CPNE7Q9UBL6 633 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 CAMTA1Q9Y6Y1 1673 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 CST6Q15828 149 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 FAM199XQ6PEV8 388 aaPredicted RBP11.76□□□□□ -0.53
VPS13A-204ENST00000376634 OR4M1Q8NGD0 313 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 CHTF18Q8WVB6 975 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 NPY6RQ99463 290 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 SMOQ99835 787 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 BCL7BQ9BQE9 202 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 OBP2BQ9NPH6 170 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 EBF1Q9UH73 591 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 CDHR4A6H8M9 788 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 SAMD8Q96LT4 415 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 UBL7Q96S82 380 aaPredicted RBP11.76□□□□□ -0.53
VPS13A-204ENST00000376634 OR51J1Q9H342 316 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 C8orf33Q9H7E9 229 aaPredicted RBP11.76□□□□□ -0.53
VPS13A-204ENST00000376634 H0Y8G0 127 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 HNRNPA1P09651 372 aaKnown RBP eCLIP11.76□□□□□ -0.53
VPS13A-204ENST00000376634 CSNK1A1P48729 337 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 HBG1P69891 147 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 HBG2P69892 147 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 MICAQ29983 383 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 PLD6Q8N2A8 252 aaKnown RBP11.76□□□□□ -0.53
VPS13A-204ENST00000376634 ZNF587Q96SQ5 575 aaPredicted RBP11.76□□□□□ -0.53
VPS13A-204ENST00000376634 CRB3Q9BUF7 120 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 NGBQ9NPG2 151 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 PCDHGA7Q9Y5G6 932 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 PCNX2A6NKB5 2137 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 PRAF2O60831 178 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 GGT1P19440 569 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 MPEG1Q2M385 716 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 USP53Q70EK8 1073 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 CNIH4Q9P003 139 aa11.76□□□□□ -0.53
VPS13A-204ENST00000376634 A6NL46 340 aa11.75□□□□□ -0.53
VPS13A-204ENST00000376634 RDH16O75452 317 aa11.75□□□□□ -0.53
VPS13A-204ENST00000376634 RPS17P08708 135 aaKnown RBP11.75□□□□□ -0.53
VPS13A-204ENST00000376634 EXOSC6Q5RKV6 272 aaKnown RBP11.75□□□□□ -0.53
VPS13A-204ENST00000376634 CPNE8Q86YQ8 564 aa11.75□□□□□ -0.53
VPS13A-204ENST00000376634 BCKDHBP21953 392 aa11.75□□□□□ -0.53
VPS13A-204ENST00000376634 SOX17Q9H6I2 414 aaPredicted RBP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms