RNA–Protein interactions for RNA: ENST00000375405.7

SCN1A-202, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,097 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-202ENST00000375405 ADAMDEC1O15204 470 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 AGR2O95994 175 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 ADH5P11766 374 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 NAGAP17050 411 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 NAA10P41227 235 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-202ENST00000375405 MAP2K3P46734 347 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 RGRP47804 291 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 MRPS6P82932 125 aaKnown RBP4.39□□□□□ -1.71
SCN1A-202ENST00000375405 GUCA2BQ16661 112 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 MARCH8Q5T0T0 291 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 GPRC6AQ5T6X5 926 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 PLD5Q8N7P1 536 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 GJC3Q8NFK1 279 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 OR4C5Q8NGB2 326 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 OR4F15Q8NGB8 312 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 DAZLQ92904 295 aaKnown RBP4.39□□□□□ -1.71
SCN1A-202ENST00000375405 ZNF775Q96BV0 537 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-202ENST00000375405 ISOC1Q96CN7 298 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 SUSD3Q96L08 255 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 TPSD1Q9BZJ3 242 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 POLR2J3Q9H1A7 115 aaKnown RBP4.39□□□□□ -1.71
SCN1A-202ENST00000375405 CTSFQ9UBX1 484 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 CD207Q9UJ71 328 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 SCML2Q9UQR0 700 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 SOX21Q9Y651 276 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-202ENST00000375405 DOCK11Q5JSL3 2073 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 USP31Q70CQ4 1352 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 SALL1Q9NSC2 1324 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 C8GP07360 202 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 ID1P41134 155 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 ZXDBP98169 803 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 OXA1LQ15070 435 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 PPP1R3AQ16821 1122 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 SFT2D3Q587I9 215 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 AMMECR1LQ6DCA0 310 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 PIM3Q86V86 326 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 KBTBD6Q86V97 674 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 ZGRF1Q86YA3 2104 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 SYT14Q8NB59 555 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 OR10K1Q8NGX5 313 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 DOK4Q8TEW6 326 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 OR5P2Q8WZ92 322 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 HARBI1Q96MB7 349 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 C1QTNF6Q9BXI9 259 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 SLC22A4Q9H015 551 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 CALHM2Q9HA72 323 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 CXorf21Q9HAI6 301 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 TAS2R16Q9NYV7 291 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 ARHGEF12Q9NZN5 1544 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 KDM6AO15550 1401 aaPredicted RBP4.39□□□□□ -1.71
SCN1A-202ENST00000375405 ASXL2Q76L83 1435 aa4.39□□□□□ -1.71
SCN1A-202ENST00000375405 A8MV72 311 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-202ENST00000375405 B4DXG7 233 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 MS4A18H0YCH9 400 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 NOBOXO60393 691 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 HBE1P02100 147 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 HTN3P15516 51 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 IL1R2P27930 398 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 EFNA3P52797 238 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 GBE1Q04446 702 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 SPEM2Q0P670 501 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 GBX1Q14549 363 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 TRAM2Q15035 370 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 NR0B2Q15466 257 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 DUOXA1Q1HG43 343 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 SLC5A9Q2M3M2 681 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 FAM214AQ32MH5 1076 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 MS4A18Q3C1V0 323 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 C1orf53Q5VUE5 145 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 STYK1Q6J9G0 422 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 SERPINA11Q86U17 422 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 RNF130Q86XS8 419 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 NECAP1Q8NC96 275 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 OR4K2Q8NGD2 314 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 PRSS3P2Q8NHM4 247 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 CDCA5Q96FF9 252 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 RDH12Q96NR8 316 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 SPIN2AQ99865 258 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 SPIN2BQ9BPZ2 258 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 ULBP3Q9BZM4 244 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 P2RY12Q9H244 342 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 SIX2Q9NPC8 291 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 SLC6A5Q9Y345 797 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 MED12Q93074 2177 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 ASTN2O75129 1339 aaPredicted RBP4.38□□□□□ -1.71
SCN1A-202ENST00000375405 ARPC3O15145 178 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 SYT7O43581 403 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 MPDU1O75352 247 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 OR13C7P0DN81 318 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 ADRB3P13945 408 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 POLR2JP52435 117 aaKnown RBP4.38□□□□□ -1.71
SCN1A-202ENST00000375405 PPP1R8Q12972 351 aaKnown RBP4.38□□□□□ -1.71
SCN1A-202ENST00000375405 KCNJ8Q15842 424 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 PRSS8Q16651 343 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 SLC22A6Q4U2R8 563 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 RAB41Q5JT25 222 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 PGAP1Q75T13 922 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 ADGRG3Q86Y34 549 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 TMPRSS6Q8IU80 811 aa4.38□□□□□ -1.71
SCN1A-202ENST00000375405 ZC3H3Q8IXZ2 948 aaKnown RBP4.38□□□□□ -1.71
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms