RNA–Protein interactions for RNA: ENST00000374116.3

HMGA1-203, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,848 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-203ENST00000374116 TCTE3Q8IZS6 198 aa13.24□□□□□ -0.29
HMGA1-203ENST00000374116 BBS10Q8TAM1 723 aa13.24□□□□□ -0.29
HMGA1-203ENST00000374116 SUN3Q8TAQ9 357 aa13.24□□□□□ -0.29
HMGA1-203ENST00000374116 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.24□□□□□ -0.29
HMGA1-203ENST00000374116 XAGE5Q8WWM1 108 aa13.24□□□□□ -0.29
HMGA1-203ENST00000374116 NXPE2Q96DL1 559 aa13.24□□□□□ -0.29
HMGA1-203ENST00000374116 SMIM10Q96HG1 83 aa13.24□□□□□ -0.29
HMGA1-203ENST00000374116 COQ7Q99807 217 aa13.24□□□□□ -0.29
HMGA1-203ENST00000374116 AIFM2Q9BRQ8 373 aa13.24□□□□□ -0.29
HMGA1-203ENST00000374116 C6orf62Q9GZU0 229 aaPredicted RBP13.24□□□□□ -0.29
HMGA1-203ENST00000374116 ZBTB20Q9HC78 741 aaPredicted RBP13.24□□□□□ -0.29
HMGA1-203ENST00000374116 BCL2L10Q9HD36 194 aa13.24□□□□□ -0.29
HMGA1-203ENST00000374116 TRPC4Q9UBN4 977 aa13.24□□□□□ -0.29
HMGA1-203ENST00000374116 ACAD8Q9UKU7 415 aa13.24□□□□□ -0.29
HMGA1-203ENST00000374116 CHD8Q9HCK8 2581 aa13.24□□□□□ -0.29
HMGA1-203ENST00000374116 SCN2AQ99250 2005 aa13.24□□□□□ -0.29
HMGA1-203ENST00000374116 HYKKA2RU49 373 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 SH3D21A4FU49 640 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 CTDSP2O14595 271 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 PGRMC2O15173 223 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 PROM1O43490 865 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 SRPX2O60687 465 aaPredicted RBP13.23□□□□□ -0.29
HMGA1-203ENST00000374116 TRIM3O75382 744 aaPredicted RBP13.23□□□□□ -0.29
HMGA1-203ENST00000374116 PRKRAO75569 313 aaKnown RBP13.23□□□□□ -0.29
HMGA1-203ENST00000374116 AIFM1O95831 613 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 H1F0P07305 194 aaKnown RBP13.23□□□□□ -0.29
HMGA1-203ENST00000374116 MSL3P1P0C860 447 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 CRISP3P54108 245 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 ESCO2Q56NI9 601 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 SPANXN2Q5MJ10 180 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 FAM69BQ5VUD6 431 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 NXNL2Q5VZ03 156 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 SZRD1Q7Z422 152 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 TMEM151BQ8IW70 566 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 CADM2Q8N3J6 435 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 OR56A1Q8NGH5 318 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 GAL3ST3Q96A11 431 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 CNRIP1Q96F85 164 aaPredicted RBP13.23□□□□□ -0.29
HMGA1-203ENST00000374116 MAP6Q96JE9 813 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 C10orf90Q96M02 699 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 ZNF285Q96NJ3 590 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 DDA1Q9BW61 102 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 UCK2Q9BZX2 261 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 PLSCR3Q9NRY6 295 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 CUTCQ9NTM9 273 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 ENTPD4Q9Y227 616 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 TMEM184BQ9Y519 407 aaPredicted RBP13.23□□□□□ -0.29
HMGA1-203ENST00000374116 NINQ8N4C6 2090 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 DSPPQ9NZW4 1301 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 TRBV4-1A0A0J9YWV2 114 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 A0A0X1KG70 313 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 PRAMEF27A3QJZ7 478 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 ZNF780AO75290 641 aaPredicted RBP13.23□□□□□ -0.29
HMGA1-203ENST00000374116 ERAL1O75616 437 aaKnown RBP13.23□□□□□ -0.29
HMGA1-203ENST00000374116 LCKP06239 509 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 CSNK2A2P19784 350 aaPredicted RBP13.23□□□□□ -0.29
HMGA1-203ENST00000374116 CHMP24386 653 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 ELAVL4P26378 380 aaKnown RBP13.23□□□□□ -0.29
HMGA1-203ENST00000374116 CERS1P27544 350 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 HTR2BP41595 481 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 OR1D4P47884 311 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 RAB8AP61006 207 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 SHC2P98077 582 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 IKZF1Q13422 519 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 PRTGQ2VWP7 1150 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 SLC48A1Q6P1K1 146 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 OR5H6Q8NGV6 325 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 ZNF681Q96N22 645 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 NIPAL2Q9H841 368 aa13.23□□□□□ -0.29
HMGA1-203ENST00000374116 LYARQ9NX58 379 aaKnown RBP13.23□□□□□ -0.29
HMGA1-203ENST00000374116 A0A0A6YYC8 382 aaPredicted RBP13.22□□□□□ -0.29
HMGA1-203ENST00000374116 ZNF860A6NHJ4 632 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 GLOD5A6NK44 160 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 I3L1I5 382 aaPredicted RBP13.22□□□□□ -0.29
HMGA1-203ENST00000374116 BET1O15155 118 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 TLX3O43711 291 aaPredicted RBP13.22□□□□□ -0.29
HMGA1-203ENST00000374116 SSX4O60224 188 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 DNAJB6O75190 326 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 FHP07954 510 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 ZNF888P0CJ79 500 aaPredicted RBP13.22□□□□□ -0.29
HMGA1-203ENST00000374116 OSMP13725 252 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 C21orf33P30042 268 aaPredicted RBP13.22□□□□□ -0.29
HMGA1-203ENST00000374116 LIPAP38571 399 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 DUSP2Q05923 314 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 SRSF6Q13247 344 aaKnown RBP13.22□□□□□ -0.29
HMGA1-203ENST00000374116 TNK1Q13470 666 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 GRM7Q14831 915 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 GPAT3Q53EU6 434 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 TCTE1Q5JU00 501 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 PRAMEF8Q5VWM4 474 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 PRAMEF7Q5VXH5 474 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 C18orf63Q68DL7 685 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 DEF8Q6ZN54 512 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 STX19Q8N4C7 294 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 TOR1AIP2Q8NFQ8 470 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 OR5D16Q8NGK9 328 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 VANGL1Q8TAA9 524 aaPredicted RBP13.22□□□□□ -0.29
HMGA1-203ENST00000374116 CRELD1Q96HD1 420 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 NDC1Q9BTX1 674 aa13.22□□□□□ -0.29
HMGA1-203ENST00000374116 B3GNT4Q9C0J1 378 aa13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms