RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 FRG2Q64ET8 278 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 LRFN4Q6PJG9 635 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 ADAMTSL4Q6UY14 1074 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 LINGO2Q7L985 606 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 NUFIP2Q7Z417 695 aaKnown RBP3.82□□□□□ -1.8
USH2A-202ENST00000366942 VRK2Q86Y07 508 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 GABRG1Q8N1C3 465 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 FUBP1Q96AE4 644 aaKnown RBP3.82□□□□□ -1.8
USH2A-202ENST00000366942 FOXRED1Q96CU9 486 aaPredicted RBP3.82□□□□□ -1.8
USH2A-202ENST00000366942 SGTBQ96EQ0 304 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 SORCS2Q96PQ0 1159 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 FRG2BQ96QU4 278 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 OCSTAMPQ9BR26 566 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 DUSP26Q9BV47 211 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 ZFP57Q9NU63 452 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 CCM2LQ9NUG4 571 aaPredicted RBP3.82□□□□□ -1.8
USH2A-202ENST00000366942 FKBP14Q9NWM8 211 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 ZDHHC9Q9Y397 364 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 URGCP-MRPS24S4R325 110 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 GVINP1Q7Z2Y8 2422 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 TRAV38-1A0A0B4J264 116 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 A0A1B0GVC2 190 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 LINC01565O15544 149 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 TPST2O60704 377 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 AQP8O94778 261 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 MT-ND2P03891 347 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 UBTFL6P0CB48 400 aaPredicted RBP3.82□□□□□ -1.8
USH2A-202ENST00000366942 HNRNPLP14866 589 aaKnown RBP eCLIP3.82□□□□□ -1.8
USH2A-202ENST00000366942 SLC25A16P16260 332 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 GNRHRP30968 328 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 PPP1CCP36873 323 aaKnown RBP3.82□□□□□ -1.8
USH2A-202ENST00000366942 LGALS7P47929 136 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 CASP4P49662 377 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 GMFBP60983 142 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 GUCA2AQ02747 115 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 SEMA5AQ13591 1074 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 SOWAHAQ2M3V2 549 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 SHISA6Q6ZSJ9 500 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 SSX6Q7RTT6 188 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 SPRED1Q7Z699 444 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 CENPVQ7Z7K6 275 aaPredicted RBP3.82□□□□□ -1.8
USH2A-202ENST00000366942 CIR1Q86X95 450 aaPredicted RBP3.82□□□□□ -1.8
USH2A-202ENST00000366942 ANKRD13BQ86YJ7 626 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 LRRC34Q8IZ02 419 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 PRR22Q8IZ63 422 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 Q8NFD4 153 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 NEU4Q8WWR8 484 aaPredicted RBP3.82□□□□□ -1.8
USH2A-202ENST00000366942 TTC9Q92623 222 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 GMPPAQ96IJ6 420 aaPredicted RBP3.82□□□□□ -1.8
USH2A-202ENST00000366942 SAMD8Q96LT4 415 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 COL21A1Q96P44 957 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 SYT3Q9BQG1 590 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 PTDSS2Q9BVG9 487 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 SPACA1Q9HBV2 294 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 ACOXLQ9NUZ1 547 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 CGGBP1Q9UFW8 167 aaPredicted RBP3.82□□□□□ -1.8
USH2A-202ENST00000366942 BAIAP2Q9UQB8 552 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 HIF3AQ9Y2N7 669 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 GPR52Q9Y2T5 361 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 TCAF1Q9Y4C2 921 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 DNAJC25-GNG10A0A024R161 153 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 EFCAB9A8MZ26 197 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 H0YIG0 161 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 ZBTB39O15060 712 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 PMM2O15305 246 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 UGDHO60701 494 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 ANXA8P13928 327 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 TCF4P15884 667 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 MMP11P24347 488 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 LTBRP36941 435 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 CAPZBP47756 277 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 SPINT3P49223 89 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 PITPNAQ00169 270 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 OXA1LQ15070 435 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 OR8G1Q15617 311 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 TRMT2AQ8IZ69 625 aaKnown RBP3.82□□□□□ -1.8
USH2A-202ENST00000366942 LMNTD1Q8N9Z9 388 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 CHST14Q8NCH0 376 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 OR13D1Q8NGV5 346 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 MARK4Q96L34 752 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 MTERF1Q99551 399 aaKnown RBP3.82□□□□□ -1.8
USH2A-202ENST00000366942 ZNF184Q99676 751 aaPredicted RBP3.82□□□□□ -1.8
USH2A-202ENST00000366942 SULT4A1Q9BR01 284 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 LRRC1Q9BTT6 524 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 MUC13Q9H3R2 512 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 C12orf49Q9H741 205 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 TMEM138Q9NPI0 162 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 ZNF358Q9NW07 568 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 SNX10Q9Y5X0 201 aa3.82□□□□□ -1.8
USH2A-202ENST00000366942 A0A0G2JN53 185 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 NME6O75414 186 aaPredicted RBP3.81□□□□□ -1.8
USH2A-202ENST00000366942 RDH16O75452 317 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 NXPH2O95156 264 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 SLC34A2O95436 690 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 ADAP00813 363 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 CD53P19397 219 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 STOMP27105 288 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 CAPGP40121 348 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 OR1D4P47884 311 aa3.81□□□□□ -1.8
USH2A-202ENST00000366942 IDH3GP51553 393 aaPredicted RBP3.81□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms