RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 RBCK1Q9BYM8 510 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 ISG20L2Q9H9L3 353 aaKnown RBP19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 C14orf105Q9NVL8 296 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 FLRT3Q9NZU0 649 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 TMEM5Q9Y2B1 443 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 PCDHGB2Q9Y5G2 931 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 FABP12A6NFH5 140 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 GAAP10253 952 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 BMP8BP34820 402 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 CTBP2P56545 445 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 FOXK2Q01167 660 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 PRPF38BQ5VTL8 546 aaKnown RBP19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 XKRXQ6PP77 449 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 Q6ZS52 159 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 BMP8AQ7Z5Y6 402 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 ACBD7Q8N6N7 88 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 AVL9Q8NBF6 648 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 GRHL3Q8TE85 626 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 CHAC2Q8WUX2 184 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 PTP4A1Q93096 173 aa19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 LMF2Q9BU23 707 aaKnown RBP19.26■□□□□ 0.67
CCDC88B-203ENST00000359902 C12orf71A8MTZ7 269 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 GABRPO00591 440 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 ADAM11O75078 769 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 PTP4A3O75365 173 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 IGKV1D-16P01601 117 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 RFX2P48378 723 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 TMED10P49755 219 aaKnown RBP19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 EMDP50402 254 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 DBPQ10586 325 aaPredicted RBP19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 INSL4Q14641 139 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 RPL13AP3Q6NVV1 102 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 C19orf47Q8N9M1 422 aaKnown RBP19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 OR4N2Q8NGD1 307 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 AP3S1Q92572 193 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 TIMP4Q99727 224 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 IFT27Q9BW83 186 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 FOLH1BQ9HBA9 442 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 CMC2Q9NRP2 79 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 ASB6Q9NWX5 421 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 A0A0A6YYC8 382 aaPredicted RBP19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 A0A0B4J2E0 115 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 A0A1B0GX12 115 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 TGFBR3LH3BV60 316 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 I3L1I5 382 aaPredicted RBP19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 CASKO14936 926 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 SAGP10523 405 aaPredicted RBP19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 PAICSP22234 425 aaKnown RBP19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 C1QTNF12Q5T7M4 302 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 MARCH9Q86YJ5 346 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 ZNF614Q8N883 585 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 ATP6V1C2Q8NEY4 427 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 DNAJA4Q8WW22 397 aaPredicted RBP19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 KISS1RQ969F8 398 aaPredicted RBP19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 ABHD8Q96I13 439 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 ITGB1BP2Q9UKP3 347 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 NDRG2Q9UN36 371 aaKnown RBP19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 TDRD6O60522 2096 aaKnown RBP19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 KNL1Q8NG31 2342 aa19.25■□□□□ 0.67
CCDC88B-203ENST00000359902 A0A1W2PQ09 198 aa19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 SHISA3A0PJX4 238 aa19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 SLC9B1P1A6NJY1 282 aa19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 B4DGG1 531 aa19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 SOX30O94993 753 aa19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 CASP3P42574 277 aa19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 ACAA2P42765 397 aaKnown RBP19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 PRTGQ2VWP7 1150 aa19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 ZNF362Q5T0B9 420 aaPredicted RBP19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 ARMC4Q5T2S8 1044 aa19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 GRAMD2AQ8IUY3 354 aa19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 TMEM99Q8N816 258 aa19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 SLC37A3Q8NCC5 494 aa19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 PTCHD1Q96NR3 888 aa19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 NEDD4LQ96PU5 975 aa19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 EVA1AQ9H8M9 152 aa19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 WSB2Q9NYS7 404 aaPredicted RBP19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 TRAV27A0A087WT01 109 aa19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 A0A1B0GWA3 101 aa19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 FAM86C2PA6NEL3 165 aa19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 HRKO00198 91 aa19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 CHP2O43745 196 aa19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 TMEM91Q6ZNR0 172 aa19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 OR51A7Q8NH64 312 aa19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 RIT1Q92963 219 aa19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 HCN3Q9P1Z3 774 aa19.24■□□□□ 0.67
CCDC88B-203ENST00000359902 SSTR4P31391 388 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 KLHL12Q53G59 568 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 NEIL3Q8TAT5 605 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 KLHDC7BQ96G42 594 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 ORAI3Q9BRQ5 295 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 LRRC61Q9BV99 259 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 ALG8Q9BVK2 526 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 BABAM2Q9NXR7 383 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 DNAJB12Q9NXW2 375 aaKnown RBP19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 A0A1W2PPC4 97 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 CD8B2A6NJW9 211 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 PRR23D1E9PI22 279 aaPredicted RBP19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 POLR1CO15160 346 aaPredicted RBP19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 FOXS1O43638 330 aa19.23■□□□□ 0.67
CCDC88B-203ENST00000359902 HCN1O60741 890 aa19.23■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms