RNA–Protein interactions for RNA: ENST00000352886.10

SHMT1-202, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2 BASIC

Gene SHMT1, Length 2,437 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-202ENST00000352886 VWA5B2Q8N398 1253 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 GDPD1Q8N9F7 314 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 OR9A4Q8NGU2 314 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 DNAJA4Q8WW22 397 aaPredicted RBP20.17■□□□□ 0.82
SHMT1-202ENST00000352886 CD207Q9UJ71 328 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 GRIP1Q9Y3R0 1128 aa20.17■□□□□ 0.82
SHMT1-202ENST00000352886 RCBTB2O95199 551 aa20.16■□□□□ 0.82
SHMT1-202ENST00000352886 IGHV4-34P06331 123 aa20.16■□□□□ 0.82
SHMT1-202ENST00000352886 BMP8BP34820 402 aa20.16■□□□□ 0.82
SHMT1-202ENST00000352886 HTR3AP46098 478 aa20.16■□□□□ 0.82
SHMT1-202ENST00000352886 RAB38P57729 211 aa20.16■□□□□ 0.82
SHMT1-202ENST00000352886 KLHL12Q53G59 568 aa20.16■□□□□ 0.82
SHMT1-202ENST00000352886 ZNF362Q5T0B9 420 aaPredicted RBP20.16■□□□□ 0.82
SHMT1-202ENST00000352886 BMP8AQ7Z5Y6 402 aa20.16■□□□□ 0.82
SHMT1-202ENST00000352886 ART5Q96L15 291 aa20.16■□□□□ 0.82
SHMT1-202ENST00000352886 IFT27Q9BW83 186 aa20.16■□□□□ 0.82
SHMT1-202ENST00000352886 RBCK1Q9BYM8 510 aa20.16■□□□□ 0.82
SHMT1-202ENST00000352886 MEPEQ9NQ76 525 aaPredicted RBP20.16■□□□□ 0.82
SHMT1-202ENST00000352886 SIGLEC7Q9Y286 467 aa20.16■□□□□ 0.82
SHMT1-202ENST00000352886 C2orf92A0A1B0GVN3 265 aa20.16■□□□□ 0.82
SHMT1-202ENST00000352886 PRAMEF26H0Y7S4 382 aa20.16■□□□□ 0.82
SHMT1-202ENST00000352886 OR10H2O60403 315 aa20.16■□□□□ 0.82
SHMT1-202ENST00000352886 PPP3R1P63098 170 aa20.16■□□□□ 0.82
SHMT1-202ENST00000352886 EIF2B5Q13144 721 aaKnown RBP20.16■□□□□ 0.82
SHMT1-202ENST00000352886 GARNL3Q5VVW2 1013 aa20.16■□□□□ 0.82
SHMT1-202ENST00000352886 TMPRSS11FQ6ZWK6 438 aa20.16■□□□□ 0.82
SHMT1-202ENST00000352886 OOSP2Q86WS3 158 aa20.16■□□□□ 0.82
SHMT1-202ENST00000352886 CNOT9Q92600 299 aaKnown RBP20.16■□□□□ 0.82
SHMT1-202ENST00000352886 ALG8Q9BVK2 526 aa20.16■□□□□ 0.82
SHMT1-202ENST00000352886 TMEM27Q9HBJ8 222 aa20.16■□□□□ 0.82
SHMT1-202ENST00000352886 ASB6Q9NWX5 421 aa20.16■□□□□ 0.82
SHMT1-202ENST00000352886 NPAP1Q9NZP6 1156 aa20.16■□□□□ 0.82
SHMT1-202ENST00000352886 BRWD1Q9NSI6 2320 aa20.16■□□□□ 0.82
SHMT1-202ENST00000352886 TRAV27A0A087WT01 109 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 FAM86C2PA6NEL3 165 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 RFPL3O75679 317 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 NKX2-2O95096 273 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 ST6GAL1P15907 406 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 FOXK2Q01167 660 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 RPL13AP3Q6NVV1 102 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 ZNF544Q6NX49 715 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 RAB43Q86YS6 212 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 TMEM99Q8N816 258 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 HOXD1Q9GZZ0 328 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 CMC2Q9NRP2 79 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 MMP17Q9ULZ9 603 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 POLHQ9Y253 713 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 TMEM5Q9Y2B1 443 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 OR5K3A6NET4 321 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 OR5K4A6NMS3 321 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 SLC35E2P0CK97 266 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 DRD5P21918 477 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 HHEXQ03014 270 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 ASAH1Q13510 395 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 C1orf61Q13536 156 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 RSBN1Q5VWQ0 802 aaPredicted RBP20.15■□□□□ 0.82
SHMT1-202ENST00000352886 FCRLBQ6BAA4 426 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 ZNF613Q6PF04 617 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 SLC37A3Q8NCC5 494 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 OR51A7Q8NH64 312 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 PMM1Q92871 262 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 KISS1RQ969F8 398 aaPredicted RBP20.15■□□□□ 0.82
SHMT1-202ENST00000352886 KIAA1143Q96AT1 154 aaPredicted RBP20.15■□□□□ 0.82
SHMT1-202ENST00000352886 EFHD2Q96C19 240 aaPredicted RBP20.15■□□□□ 0.82
SHMT1-202ENST00000352886 ATF6BQ99941 703 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 ZNF559Q9BR84 538 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 C14orf105Q9NVL8 296 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 WDR70Q9NW82 654 aa20.15■□□□□ 0.82
SHMT1-202ENST00000352886 DVL2O14641 736 aa20.14■□□□□ 0.82
SHMT1-202ENST00000352886 HPGDSO60760 199 aa20.14■□□□□ 0.82
SHMT1-202ENST00000352886 GSTT2P0CG29 244 aa20.14■□□□□ 0.82
SHMT1-202ENST00000352886 GSTT2BP0CG30 244 aa20.14■□□□□ 0.82
SHMT1-202ENST00000352886 SLC16A1P53985 500 aa20.14■□□□□ 0.82
SHMT1-202ENST00000352886 RPS7P62081 194 aaKnown RBP20.14■□□□□ 0.82
SHMT1-202ENST00000352886 PSG6Q00889 435 aa20.14■□□□□ 0.82
SHMT1-202ENST00000352886 SRSF5Q13243 272 aaKnown RBP20.14■□□□□ 0.82
SHMT1-202ENST00000352886 TMEM91Q6ZNR0 172 aa20.14■□□□□ 0.82
SHMT1-202ENST00000352886 PTP4A1Q93096 173 aa20.14■□□□□ 0.82
SHMT1-202ENST00000352886 PTCHD1Q96NR3 888 aa20.14■□□□□ 0.82
SHMT1-202ENST00000352886 GAS2L1Q99501 681 aaPredicted RBP20.14■□□□□ 0.82
SHMT1-202ENST00000352886 TIMP4Q99727 224 aa20.14■□□□□ 0.82
SHMT1-202ENST00000352886 SLC22A4Q9H015 551 aa20.14■□□□□ 0.82
SHMT1-202ENST00000352886 C8orf33Q9H7E9 229 aaPredicted RBP20.14■□□□□ 0.82
SHMT1-202ENST00000352886 POLE3Q9NRF9 147 aa20.14■□□□□ 0.82
SHMT1-202ENST00000352886 USP36Q9P275 1121 aaKnown RBP20.14■□□□□ 0.82
SHMT1-202ENST00000352886 SPTBP11277 2137 aa20.14■□□□□ 0.81
SHMT1-202ENST00000352886 PRR23D1E9PI22 279 aaPredicted RBP20.14■□□□□ 0.81
SHMT1-202ENST00000352886 TFECO14948 347 aaPredicted RBP20.14■□□□□ 0.81
SHMT1-202ENST00000352886 REM1O75628 298 aa20.14■□□□□ 0.81
SHMT1-202ENST00000352886 IFI6P09912 130 aa20.14■□□□□ 0.81
SHMT1-202ENST00000352886 PRR23D2P0DMB1 279 aaPredicted RBP20.14■□□□□ 0.81
SHMT1-202ENST00000352886 GAAP10253 952 aa20.14■□□□□ 0.81
SHMT1-202ENST00000352886 CNIH2Q6PI25 160 aa20.14■□□□□ 0.81
SHMT1-202ENST00000352886 NLGN4YQ8NFZ3 816 aaPredicted RBP20.14■□□□□ 0.81
SHMT1-202ENST00000352886 OR10H4Q8NGA5 316 aa20.14■□□□□ 0.81
SHMT1-202ENST00000352886 C11orf54Q9H0W9 315 aaPredicted RBP20.14■□□□□ 0.81
SHMT1-202ENST00000352886 MMP28Q9H239 520 aa20.14■□□□□ 0.81
SHMT1-202ENST00000352886 OR51V1Q9H2C8 321 aa20.14■□□□□ 0.81
SHMT1-202ENST00000352886 BABAM2Q9NXR7 383 aa20.14■□□□□ 0.81
SHMT1-202ENST00000352886 FLRT3Q9NZU0 649 aa20.14■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms