RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 UNC80Q8N2C7 3258 aa20.48■□□□□ 0.87
UPF3A-201ENST00000351487 MEIOCA2RUB1 952 aa20.48■□□□□ 0.87
UPF3A-201ENST00000351487 SLC22A31A6NKX4 558 aa20.48■□□□□ 0.87
UPF3A-201ENST00000351487 OR5K4A6NMS3 321 aa20.48■□□□□ 0.87
UPF3A-201ENST00000351487 GTPBP1O00178 669 aaKnown RBP20.48■□□□□ 0.87
UPF3A-201ENST00000351487 COQ9O75208 318 aa20.48■□□□□ 0.87
UPF3A-201ENST00000351487 RGS9O75916 674 aaPredicted RBP20.48■□□□□ 0.87
UPF3A-201ENST00000351487 SOX30O94993 753 aa20.48■□□□□ 0.87
UPF3A-201ENST00000351487 GUSBP08236 651 aa20.48■□□□□ 0.87
UPF3A-201ENST00000351487 RABIFP47224 123 aa20.48■□□□□ 0.87
UPF3A-201ENST00000351487 NKX2-5P52952 324 aaPredicted RBP20.48■□□□□ 0.87
UPF3A-201ENST00000351487 FOXK2Q01167 660 aa20.48■□□□□ 0.87
UPF3A-201ENST00000351487 INSL4Q14641 139 aa20.48■□□□□ 0.87
UPF3A-201ENST00000351487 B3GLCTQ6Y288 498 aa20.48■□□□□ 0.87
UPF3A-201ENST00000351487 PRR23CQ6ZRP0 262 aa20.48■□□□□ 0.87
UPF3A-201ENST00000351487 ZAR1Q86SH2 424 aa20.48■□□□□ 0.87
UPF3A-201ENST00000351487 SLC37A2Q8TED4 501 aa20.48■□□□□ 0.87
UPF3A-201ENST00000351487 DEPDC7Q96QD5 511 aa20.48■□□□□ 0.87
UPF3A-201ENST00000351487 PHOX2BQ99453 314 aa20.48■□□□□ 0.87
UPF3A-201ENST00000351487 KCNN2Q9H2S1 579 aa20.48■□□□□ 0.87
UPF3A-201ENST00000351487 A0A0B4J2E0 115 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 A0A1B0GX12 115 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 CD8B2A6NJW9 211 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 CHP2O43745 196 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 HPGDSO60760 199 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 SLC35E2P0CK97 266 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 CD8BP10966 210 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 NR4A2P43354 598 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 EVX1P49640 407 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 GALEQ14376 348 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 ATAD3CQ5T2N8 411 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 MZT2AQ6P582 158 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 GRAMD2AQ8IUY3 354 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 VWA5B2Q8N398 1253 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 TMEM99Q8N816 258 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 RPLP0P6Q8NHW5 317 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 NACC2Q96BF6 587 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 SLC28A3Q9HAS3 691 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 TMEM27Q9HBJ8 222 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 NDRG2Q9UN36 371 aaKnown RBP20.47■□□□□ 0.87
UPF3A-201ENST00000351487 LINC00854A0A1B0GVQ3 168 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 TCRBV21S2A2A0A5A6 115 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 ZC3H12DA2A288 527 aaKnown RBP20.47■□□□□ 0.87
UPF3A-201ENST00000351487 CCDC182A6NF36 153 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 PLA2G10O15496 165 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 GABRG2P18507 467 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 SSTR4P31391 388 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 DDOSTP39656 456 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 VSX2P58304 361 aaPredicted RBP20.47■□□□□ 0.87
UPF3A-201ENST00000351487 ZNF800Q2TB10 664 aaPredicted RBP eCLIP20.47■□□□□ 0.872e-6■■□□□ 11.5
UPF3A-201ENST00000351487 LSRQ86X29 649 aaPredicted RBP20.47■□□□□ 0.87
UPF3A-201ENST00000351487 SLC37A3Q8NCC5 494 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 PTP4A1Q93096 173 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 ZNF426Q9BUY5 554 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 IFT27Q9BW83 186 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 TCEAL2Q9H3H9 227 aaPredicted RBP20.47■□□□□ 0.87
UPF3A-201ENST00000351487 MSRAQ9UJ68 235 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 SLC35A3Q9Y2D2 325 aa20.47■□□□□ 0.87
UPF3A-201ENST00000351487 PRR23D1E9PI22 279 aaPredicted RBP20.46■□□□□ 0.87
UPF3A-201ENST00000351487 SGK494L7N484 410 aa20.46■□□□□ 0.87
UPF3A-201ENST00000351487 PTP4A3O75365 173 aa20.46■□□□□ 0.87
UPF3A-201ENST00000351487 SEMA4FO95754 770 aa20.46■□□□□ 0.87
UPF3A-201ENST00000351487 PRR23D2P0DMB1 279 aaPredicted RBP20.46■□□□□ 0.87
UPF3A-201ENST00000351487 SAGP10523 405 aaPredicted RBP20.46■□□□□ 0.87
UPF3A-201ENST00000351487 APEX1P27695 318 aaKnown RBP20.46■□□□□ 0.87
UPF3A-201ENST00000351487 MTNR1BP49286 362 aa20.46■□□□□ 0.87
UPF3A-201ENST00000351487 DAB2P98082 770 aa20.46■□□□□ 0.87
UPF3A-201ENST00000351487 LCN1P1Q5VSP4 162 aa20.46■□□□□ 0.87
UPF3A-201ENST00000351487 SFTPA2Q8IWL1 248 aa20.46■□□□□ 0.87
UPF3A-201ENST00000351487 ARHGEF39Q8N4T4 335 aa20.46■□□□□ 0.87
UPF3A-201ENST00000351487 OR52R1Q8NGF1 315 aa20.46■□□□□ 0.87
UPF3A-201ENST00000351487 CCDC3Q9BQI4 270 aa20.46■□□□□ 0.87
UPF3A-201ENST00000351487 LMF2Q9BU23 707 aaKnown RBP20.46■□□□□ 0.87
UPF3A-201ENST00000351487 MMP28Q9H239 520 aa20.46■□□□□ 0.87
UPF3A-201ENST00000351487 TRIM36Q9NQ86 728 aa20.46■□□□□ 0.87
UPF3A-201ENST00000351487 BAIAP2Q9UQB8 552 aa20.46■□□□□ 0.87
UPF3A-201ENST00000351487 C2orf92A0A1B0GVN3 265 aa20.46■□□□□ 0.87
UPF3A-201ENST00000351487 NCR1O76036 304 aa20.46■□□□□ 0.87
UPF3A-201ENST00000351487 CD53P19397 219 aa20.46■□□□□ 0.87
UPF3A-201ENST00000351487 HOXD12P35452 270 aa20.46■□□□□ 0.87
UPF3A-201ENST00000351487 DGAT2L6Q6ZPD8 337 aa20.46■□□□□ 0.87
UPF3A-201ENST00000351487 SLC43A2Q8N370 569 aa20.46■□□□□ 0.87
UPF3A-201ENST00000351487 CNOT9Q92600 299 aaKnown RBP20.46■□□□□ 0.87
UPF3A-201ENST00000351487 ST6GAL2Q96JF0 529 aa20.46■□□□□ 0.87
UPF3A-201ENST00000351487 TRPV5Q9NQA5 729 aa20.46■□□□□ 0.87
UPF3A-201ENST00000351487 SIRT4Q9Y6E7 314 aaPredicted RBP20.46■□□□□ 0.87
UPF3A-201ENST00000351487 DAPL1A0PJW8 107 aa20.45■□□□□ 0.86
UPF3A-201ENST00000351487 OR5K3A6NET4 321 aa20.45■□□□□ 0.86
UPF3A-201ENST00000351487 B4DXG7 233 aa20.45■□□□□ 0.86
UPF3A-201ENST00000351487 PRAMEF26H0Y7S4 382 aa20.45■□□□□ 0.86
UPF3A-201ENST00000351487 RFPL3O75679 317 aa20.45■□□□□ 0.86
UPF3A-201ENST00000351487 SLC2A5P22732 501 aa20.45■□□□□ 0.86
UPF3A-201ENST00000351487 PPP1CAP62136 330 aa20.45■□□□□ 0.86
UPF3A-201ENST00000351487 PSG6Q00889 435 aa20.45■□□□□ 0.86
UPF3A-201ENST00000351487 ZNF362Q5T0B9 420 aaPredicted RBP20.45■□□□□ 0.86
UPF3A-201ENST00000351487 TMEM53Q6P2H8 277 aa20.45■□□□□ 0.86
UPF3A-201ENST00000351487 OOSP2Q86WS3 158 aa20.45■□□□□ 0.86
UPF3A-201ENST00000351487 ACOT12Q8WYK0 555 aa20.45■□□□□ 0.86
UPF3A-201ENST00000351487 SENP5Q96HI0 755 aaPredicted RBP20.45■□□□□ 0.86
UPF3A-201ENST00000351487 AHCYL2Q96HN2 611 aaKnown RBP20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms