RNA–Protein interactions for RNA: ENST00000343916.7

COL9A3-201, Transcript of collagen type IX alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A3, Length 2,485 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-201ENST00000343916 PTCHD1Q96NR3 888 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 NEDD4LQ96PU5 975 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 GPR174Q9BXC1 333 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 C8orf33Q9H7E9 229 aaPredicted RBP17.93■□□□□ 0.46
COL9A3-201ENST00000343916 C2orf42Q9NWW7 574 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 USP36Q9P275 1121 aaKnown RBP17.93■□□□□ 0.46
COL9A3-201ENST00000343916 EXOGQ9Y2C4 368 aaKnown RBP17.93■□□□□ 0.46
COL9A3-201ENST00000343916 NOX1Q9Y5S8 564 aa17.93■□□□□ 0.46
COL9A3-201ENST00000343916 SHISA3A0PJX4 238 aa17.92■□□□□ 0.46
COL9A3-201ENST00000343916 DVL2O14641 736 aa17.92■□□□□ 0.46
COL9A3-201ENST00000343916 IGHA1P01876 353 aa17.92■□□□□ 0.46
COL9A3-201ENST00000343916 HMGN1P05114 100 aa17.92■□□□□ 0.46
COL9A3-201ENST00000343916 SAGP10523 405 aaPredicted RBP17.92■□□□□ 0.46
COL9A3-201ENST00000343916 SSTR4P31391 388 aa17.92■□□□□ 0.46
COL9A3-201ENST00000343916 PSG6Q00889 435 aa17.92■□□□□ 0.46
COL9A3-201ENST00000343916 TAB1Q15750 504 aa17.92■□□□□ 0.46
COL9A3-201ENST00000343916 KLHL36Q8N4N3 616 aa17.92■□□□□ 0.46
COL9A3-201ENST00000343916 NLGN4YQ8NFZ3 816 aaPredicted RBP17.92■□□□□ 0.46
COL9A3-201ENST00000343916 OR52L1Q8NGH7 329 aa17.92■□□□□ 0.46
COL9A3-201ENST00000343916 BRIX1Q8TDN6 353 aaKnown RBP17.92■□□□□ 0.46
COL9A3-201ENST00000343916 BPIFA2Q96DR5 249 aa17.92■□□□□ 0.46
COL9A3-201ENST00000343916 ISYNA1Q9NPH2 558 aa17.92■□□□□ 0.46
COL9A3-201ENST00000343916 MEPEQ9NQ76 525 aaPredicted RBP17.92■□□□□ 0.46
COL9A3-201ENST00000343916 HCN3Q9P1Z3 774 aa17.92■□□□□ 0.46
COL9A3-201ENST00000343916 MN1Q10571 1320 aaPredicted RBP17.92■□□□□ 0.46
COL9A3-201ENST00000343916 A0A0A6YYC8 382 aaPredicted RBP17.92■□□□□ 0.46
COL9A3-201ENST00000343916 SLC35F4A4IF30 521 aa17.92■□□□□ 0.46
COL9A3-201ENST00000343916 FAM221BA6H8Z2 402 aa17.92■□□□□ 0.46
COL9A3-201ENST00000343916 I3L1I5 382 aaPredicted RBP17.92■□□□□ 0.46
COL9A3-201ENST00000343916 CHST10O43529 356 aa17.92■□□□□ 0.46
COL9A3-201ENST00000343916 HYAL3O43820 417 aaPredicted RBP17.92■□□□□ 0.46
COL9A3-201ENST00000343916 NCR1O76036 304 aa17.92■□□□□ 0.46
COL9A3-201ENST00000343916 BMP7P18075 431 aa17.92■□□□□ 0.46
COL9A3-201ENST00000343916 CSTF1Q05048 431 aaKnown RBP17.92■□□□□ 0.46
COL9A3-201ENST00000343916 KLHL12Q53G59 568 aa17.92■□□□□ 0.46
COL9A3-201ENST00000343916 VASNQ6EMK4 673 aa17.92■□□□□ 0.46
COL9A3-201ENST00000343916 CD200R1LQ6Q8B3 271 aa17.92■□□□□ 0.46
COL9A3-201ENST00000343916 FAM160A2Q8N612 972 aaPredicted RBP17.92■□□□□ 0.46
COL9A3-201ENST00000343916 OR51A7Q8NH64 312 aa17.92■□□□□ 0.46
COL9A3-201ENST00000343916 RLN3Q8WXF3 142 aa17.92■□□□□ 0.46
COL9A3-201ENST00000343916 MOV10Q9HCE1 1003 aaKnown RBP17.92■□□□□ 0.46
COL9A3-201ENST00000343916 GSTK1Q9Y2Q3 226 aa17.92■□□□□ 0.46
COL9A3-201ENST00000343916 C2orf92A0A1B0GVN3 265 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 CD8B2A6NJW9 211 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 CASKO14936 926 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 CD8BP10966 210 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 IL7P13232 177 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 RAB38P57729 211 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 KRR1Q13601 381 aaKnown RBP17.91■□□□□ 0.46
COL9A3-201ENST00000343916 ERV3-1Q14264 604 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 DTX4Q9Y2E6 619 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 A0A1W2PQ09 198 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 C12orf71A8MTZ7 269 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 TGFBR3LH3BV60 316 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 AKAP8O43823 692 aaKnown RBP17.91■□□□□ 0.46
COL9A3-201ENST00000343916 KRT8P05787 483 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 PAICSP22234 425 aaKnown RBP17.91■□□□□ 0.46
COL9A3-201ENST00000343916 EMDP50402 254 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 SLC16A1P53985 500 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 MAT1AQ00266 395 aaKnown RBP17.91■□□□□ 0.46
COL9A3-201ENST00000343916 TMEM44Q2T9K0 475 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 GLYR1Q49A26 553 aaPredicted RBP17.91■□□□□ 0.46
COL9A3-201ENST00000343916 MANEAQ5SRI9 462 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 AGAP6Q5VW22 663 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 KIAA0895LQ68EN5 471 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 NIPAL3Q6P499 406 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 ZNF322Q6U7Q0 402 aaPredicted RBP17.91■□□□□ 0.46
COL9A3-201ENST00000343916 ARIH2OSQ8N7S6 290 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 ZDHHC1Q8WTX9 485 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 AGAP4Q96P64 663 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 IFT27Q9BW83 186 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 FLRT3Q9NZU0 649 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 COMMD3Q9UBI1 195 aa17.91■□□□□ 0.46
COL9A3-201ENST00000343916 FABP12A6NFH5 140 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 GABRPO00591 440 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 REM1O75628 298 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 IGKV1D-16P01601 117 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 FGF9P31371 208 aaPredicted RBP17.9■□□□□ 0.46
COL9A3-201ENST00000343916 MAZP56270 477 aaKnown RBP17.9■□□□□ 0.46
COL9A3-201ENST00000343916 OR2B6P58173 313 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 NNATQ16517 81 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 ARMC4Q5T2S8 1044 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 ARMC6Q6NXE6 501 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 ZCCHC12Q6PEW1 402 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 TMEM99Q8N816 258 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 TMCO6Q96DC7 493 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 MED18Q9BUE0 208 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 SIGLEC7Q9Y286 467 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 TRDV1A0A1B0GX56 115 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 SLC9B1P1A6NJY1 282 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 OR5K4A6NMS3 321 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 NKX2-2O95096 273 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 SLC35E2P0CK97 266 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 CLUP10909 449 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 RFX2P48378 723 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 DAB2P98082 770 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 NDUFA5Q16718 116 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 AMZ1Q400G9 498 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 DDI2Q5TDH0 399 aa17.9■□□□□ 0.46
COL9A3-201ENST00000343916 MARCH9Q86YJ5 346 aa17.9■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 85.8 ms