RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 ERV3-1Q14264 604 aa13.79□□□□□ -0.2
VIPAS39-202ENST00000343765 TMEM44Q2T9K0 475 aa13.79□□□□□ -0.2
VIPAS39-202ENST00000343765 GLYR1Q49A26 553 aaPredicted RBP13.79□□□□□ -0.2
VIPAS39-202ENST00000343765 NIPAL3Q6P499 406 aa13.79□□□□□ -0.2
VIPAS39-202ENST00000343765 OOSP2Q86WS3 158 aa13.79□□□□□ -0.2
VIPAS39-202ENST00000343765 AVL9Q8NBF6 648 aa13.79□□□□□ -0.2
VIPAS39-202ENST00000343765 BRIX1Q8TDN6 353 aaKnown RBP13.79□□□□□ -0.2
VIPAS39-202ENST00000343765 SATB2Q9UPW6 733 aa13.79□□□□□ -0.2
VIPAS39-202ENST00000343765 WDFY4Q6ZS81 3184 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 A0A0A6YYC8 382 aaPredicted RBP13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 A8MV72 311 aaPredicted RBP13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 I3L1I5 382 aaPredicted RBP13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 BHLHE40O14503 412 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 CHST10O43529 356 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 HRO43593 1189 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 BRINP1O60477 761 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 HPGDSO60760 199 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 LYPD3O95274 346 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 CSF3P09919 207 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 THEGLP0DJG4 465 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 TBXA2RP21731 343 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 RABIFP47224 123 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 EMDP50402 254 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 RSBN1Q5VWQ0 802 aaPredicted RBP13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 VASNQ6EMK4 673 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 ARMC6Q6NXE6 501 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 ZNF517Q6ZMY9 492 aaPredicted RBP13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 Q6ZS52 159 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 Q8N9G6 341 aaPredicted RBP13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 AP3S1Q92572 193 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 TOE1Q96GM8 510 aaKnown RBP13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 STACQ99469 402 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 MED31Q9Y3C7 131 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 TRDV1A0A1B0GX56 115 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 DYRK3O43781 588 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 ADAM11O75078 769 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 CSF2P04141 144 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 GYPBP06028 91 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 NOS3P29474 1203 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 BMP8BP34820 402 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 MAT1AQ00266 395 aaKnown RBP13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 RAB30Q15771 203 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 AMZ1Q400G9 498 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 AGAP6Q5VW22 663 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 BMP8AQ7Z5Y6 402 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 CDK20Q8IZL9 346 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 METTL27Q8N6F8 245 aaPredicted RBP13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 ARIH2OSQ8N7S6 290 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 AGAP4Q96P64 663 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 SMAD5Q99717 465 aaKnown RBP13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 MED18Q9BUE0 208 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 ALG8Q9BVK2 526 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 GPR174Q9BXC1 333 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 TTTY10Q9BZA0 68 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 MEPEQ9NQ76 525 aaPredicted RBP13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 FBXL4Q9UKA2 621 aa13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 SIRT4Q9Y6E7 314 aaPredicted RBP13.78□□□□□ -0.2
VIPAS39-202ENST00000343765 PRAMEF26H0Y7S4 382 aa13.77□□□□□ -0.2
VIPAS39-202ENST00000343765 PPP1R3DO95685 299 aa13.77□□□□□ -0.2
VIPAS39-202ENST00000343765 HLA-DPB1P04440 258 aa13.77□□□□□ -0.2
VIPAS39-202ENST00000343765 FGF9P31371 208 aaPredicted RBP13.77□□□□□ -0.2
VIPAS39-202ENST00000343765 SCN1BQ07699 218 aa13.77□□□□□ -0.2
VIPAS39-202ENST00000343765 CD200R1LQ6Q8B3 271 aa13.77□□□□□ -0.2
VIPAS39-202ENST00000343765 GID4Q8IVV7 300 aa13.77□□□□□ -0.2
VIPAS39-202ENST00000343765 ACBD7Q8N6N7 88 aa13.77□□□□□ -0.2
VIPAS39-202ENST00000343765 OR52N1Q8NH53 320 aa13.77□□□□□ -0.2
VIPAS39-202ENST00000343765 TWSG1Q9GZX9 223 aa13.77□□□□□ -0.2
VIPAS39-202ENST00000343765 TMEM27Q9HBJ8 222 aa13.77□□□□□ -0.2
VIPAS39-202ENST00000343765 DAPL1A0PJW8 107 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 OR5K3A6NET4 321 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 APEX1P27695 318 aaKnown RBP13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 LTBRP36941 435 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 MAZP56270 477 aaKnown RBP13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 RAB38P57729 211 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 COPZ1P61923 177 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 FOXK2Q01167 660 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 FZD5Q13467 585 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 PRPF38BQ5VTL8 546 aaKnown RBP13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 CNIH2Q6PI25 160 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 XKRXQ6PP77 449 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 MEPCEQ7L2J0 689 aaKnown RBP13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 ABI3BPQ7Z7G0 1075 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 CADM2Q8N3J6 435 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 SLC37A3Q8NCC5 494 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 SETD6Q8TBK2 473 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 RLN3Q8WXF3 142 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 PEX11GQ96HA9 241 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 FLRT3Q9NZU0 649 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 MMP17Q9ULZ9 603 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 DTX4Q9Y2E6 619 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 HS3ST3A1Q9Y663 406 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 A0A1B0GWA3 101 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 FAM86C2PA6NEL3 165 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 PRR23D1E9PI22 279 aaPredicted RBP13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 IGKV1D-16P01601 117 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 PRR23D2P0DMB1 279 aaPredicted RBP13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 FZD2Q14332 565 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 NDUFAF6Q330K2 333 aa13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 EXOSC6Q5RKV6 272 aaKnown RBP13.77□□□□□ -0.21
VIPAS39-202ENST00000343765 FAM160A2Q8N612 972 aaPredicted RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms