RNA–Protein interactions for RNA: ENST00000341247.8

LIMA1-201, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMA1, Length 3,706 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-201ENST00000341247 PPP1R3DO95685 299 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 IGKV1D-16P01601 117 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 APOA1P02647 267 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 CSF2P04141 144 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 HCCSP53701 268 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 PSPHP78330 225 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 ZNF79Q15937 498 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 PLK5Q496M5 336 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 RIT1Q92963 219 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 SLC25A46Q96AG3 418 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 LMF1Q96S06 567 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 ARHGAP9Q9BRR9 750 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 FGF20Q9NP95 211 aaPredicted RBP9.57□□□□□ -0.88
LIMA1-201ENST00000341247 MEPEQ9NQ76 525 aaPredicted RBP9.57□□□□□ -0.88
LIMA1-201ENST00000341247 EXOSC1Q9Y3B2 195 aaKnown RBP9.57□□□□□ -0.88
LIMA1-201ENST00000341247 HS3ST3A1Q9Y663 406 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 ARID1BQ8NFD5 2236 aaPredicted RBP9.57□□□□□ -0.88
LIMA1-201ENST00000341247 SHISA3A0PJX4 238 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 ISPDA4D126 451 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 TTC36A6NLP5 189 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 PLOD3O60568 738 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 ENDOUP21128 410 aaKnown RBP9.57□□□□□ -0.88
LIMA1-201ENST00000341247 PSG6Q00889 435 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 NKAIN2Q5VXU1 208 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 RNF44Q7L0R7 432 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 KLHL36Q8N4N3 616 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 C7orf57Q8NEG2 295 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 LMX1AQ8TE12 382 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 HS6ST2Q96MM7 605 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 TNFRSF13CQ96RJ3 184 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 GDF15Q99988 308 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 C8orf33Q9H7E9 229 aaPredicted RBP9.57□□□□□ -0.88
LIMA1-201ENST00000341247 TMEM27Q9HBJ8 222 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 NTMQ9P121 344 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 PLEKHB1Q9UF11 243 aaPredicted RBP9.57□□□□□ -0.88
LIMA1-201ENST00000341247 TBC1D24Q9ULP9 559 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 CA14Q9ULX7 337 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 ENTPD2Q9Y5L3 495 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 V9GYH0 126 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 CACNA1CQ13936 2221 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 SPAG17Q6Q759 2223 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 A0A1B0GVC2 190 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 A0A1W2PQ09 198 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 TMEM129A0AVI4 362 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 FABP12A6NFH5 140 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 A6NIN4 97 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 KLF4O43474 513 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 GFERP55789 205 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 CRYZQ08257 329 aaKnown RBP9.57□□□□□ -0.88
LIMA1-201ENST00000341247 KCNAB1Q14722 419 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 PYDC2Q56P42 97 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 SNAP47Q5SQN1 464 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 SLC25A30Q5SVS4 291 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 FAM27D1Q5T7N8 215 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 RPTNQ6XPR3 784 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 EGFL6Q8IUX8 553 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 CDK20Q8IZL9 346 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 ARL14Q8N4G2 192 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 C19orf47Q8N9M1 422 aaKnown RBP9.57□□□□□ -0.88
LIMA1-201ENST00000341247 MMABQ96EY8 250 aaPredicted RBP9.57□□□□□ -0.88
LIMA1-201ENST00000341247 TGM7Q96PF1 710 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 MMP28Q9H239 520 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 MIXL1Q9H2W2 232 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 DUSP22Q9NRW4 184 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 FLRT3Q9NZU0 649 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 POU2F3Q9UKI9 436 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 SF3B6Q9Y3B4 125 aaKnown RBP9.57□□□□□ -0.88
LIMA1-201ENST00000341247 MED31Q9Y3C7 131 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 OR10H1Q9Y4A9 318 aa9.57□□□□□ -0.88
LIMA1-201ENST00000341247 SIRT4Q9Y6E7 314 aaPredicted RBP9.57□□□□□ -0.88
LIMA1-201ENST00000341247 UNC13CQ8NB66 2214 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 A0A075B6Q4 140 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 KIR2DS5A0A0G2JLQ3 304 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 A0A0G2JNG1 304 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 A0A1B0GWA3 101 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 KIR2DS3K7RE56 304 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 BRINP1O60477 761 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 SELENBP1Q13228 472 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 DSG2Q14126 1118 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 KIR2DS5Q14953 304 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 DEFB133Q30KQ1 61 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 PRAMEF17Q5VTA0 474 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 NXNL2Q5VZ03 156 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 ARL9Q6T311 187 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 PRSS58Q8IYP2 241 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 ATP6V1C2Q8NEY4 427 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 NEIL3Q8TAT5 605 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 SP140LQ9H930 580 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 KRCC1Q9NPI7 259 aaPredicted RBP9.56□□□□□ -0.88
LIMA1-201ENST00000341247 LRIT1Q9P2V4 623 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 ERVK-19Q9WJR5 959 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 GSTK1Q9Y2Q3 226 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 A0A1W2PPK0 400 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 NGFRP08138 427 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 TBXA2RP21731 343 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 BMP8BP34820 402 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 CCR4P51679 360 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 RAB38P57729 211 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 AMZ1Q400G9 498 aa9.56□□□□□ -0.88
LIMA1-201ENST00000341247 GDPGP1Q6ZNW5 385 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 27.4 ms