RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 RPS6KB2Q9UBS0 482 aa12.31□□□□□ -0.44
HMGB1-202ENST00000339872 ZNF223Q9UK11 482 aaPredicted RBP12.31□□□□□ -0.44
HMGB1-202ENST00000339872 CLCA1A8K7I4 914 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 TO15178 435 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 KLK3P07288 261 aaPredicted RBP12.3□□□□□ -0.44
HMGB1-202ENST00000339872 CD59P13987 128 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 MAP2K4P45985 399 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 CCR4P51679 360 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 RNF4P78317 190 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 CDK5Q00535 292 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 CLEC12AQ5QGZ9 265 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 FNDC7Q5VTL7 733 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 ACSM5Q6NUN0 579 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 MRPL14Q6P1L8 145 aaKnown RBP12.3□□□□□ -0.44
HMGB1-202ENST00000339872 SLC27A4Q6P1M0 643 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 KIRREL2Q6UWL6 708 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 APOOLQ6UXV4 268 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 PRSS48Q7RTY5 328 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 RNF113BQ8IZP6 322 aaKnown RBP12.3□□□□□ -0.44
HMGB1-202ENST00000339872 SLC34A3Q8N130 599 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 TMCO5AQ8N6Q1 288 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 ZNF441Q8N8Z8 693 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 APCDD1LQ8NCL9 501 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 OR13F1Q8NGS4 319 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 OIT3Q8WWZ8 545 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 OMA1Q96E52 524 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 HSPBAP1Q96EW2 488 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 CMKLR1Q99788 373 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 SLC25A19Q9HC21 320 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 ATP13A2Q9NQ11 1180 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 GPR83Q9NYM4 423 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 GPN3Q9UHW5 284 aaPredicted RBP12.3□□□□□ -0.44
HMGB1-202ENST00000339872 MED31Q9Y3C7 131 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 GPR179Q6PRD1 2367 aa12.3□□□□□ -0.44
HMGB1-202ENST00000339872 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.29□□□□□ -0.44
HMGB1-202ENST00000339872 ITIH1P19827 911 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 TBXA2RP21731 343 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 ABCD3P28288 659 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 CCKBRP32239 447 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 MASP1P48740 699 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 SNRPGP62308 76 aaKnown RBP12.29□□□□□ -0.44
HMGB1-202ENST00000339872 FAM69BQ5VUD6 431 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 GPR107Q5VW38 600 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 HSDL2Q6YN16 418 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 ZNF620Q6ZNG0 422 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 CPEB2Q7Z5Q1 589 aaKnown RBP12.29□□□□□ -0.44
HMGB1-202ENST00000339872 SLCO6A1Q86UG4 719 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 ZNF440Q8IYI8 595 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 SVOPQ8N4V2 548 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 FAM71CQ8NEG0 241 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 NFAM1Q8NET5 270 aaPredicted RBP12.29□□□□□ -0.44
HMGB1-202ENST00000339872 OR8J1Q8NGP2 316 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 FAR1Q8WVX9 515 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 GGHQ92820 318 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 MR1Q95460 341 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 MUL1Q969V5 352 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 C8orf44Q96CB5 159 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 LPAR4Q99677 370 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 EDEM2Q9BV94 578 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 SEMA4CQ9C0C4 833 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 DNAJC27Q9NZQ0 273 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 SELENONQ9NZV5 590 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 AKAP7Q9P0M2 348 aaPredicted RBP12.29□□□□□ -0.44
HMGB1-202ENST00000339872 PCDHGB1Q9Y5G3 927 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 TEX51A0A1B0GUA7 166 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 SH3D21A4FU49 640 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 GTPBP1O00178 669 aaKnown RBP12.29□□□□□ -0.44
HMGB1-202ENST00000339872 OIP5O43482 229 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 PRKYO43930 277 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 TSPAN2O60636 221 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 ENTPD6O75354 484 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 SEC14L2O76054 403 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 FUT1P19526 365 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 MAKP20794 623 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 GSTT1P30711 240 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 ADH7P40394 386 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 PCYT1AP49585 367 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 COPZ1P61923 177 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 PRKCDQ05655 676 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 SKP2Q13309 424 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 GTF2IRD2BQ6EKJ0 949 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 ULK3Q6PHR2 472 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 GTF2IRD2Q86UP8 949 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 CDK20Q8IZL9 346 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 C17orf47Q8NEP4 570 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 THAP3Q8WTV1 239 aaPredicted RBP12.29□□□□□ -0.44
HMGB1-202ENST00000339872 TRUB1Q8WWH5 349 aaKnown RBP12.29□□□□□ -0.44
HMGB1-202ENST00000339872 OSTF1Q92882 214 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 MYDGFQ969H8 173 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 BPIFA2Q96DR5 249 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 MPP4Q96JB8 637 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 HS6ST2Q96MM7 605 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 SIGLEC11Q96RL6 698 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 TSC22D3Q99576 134 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 WDR77Q9BQA1 342 aaPredicted RBP12.29□□□□□ -0.44
HMGB1-202ENST00000339872 TSSK6Q9BXA6 273 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 WDR54Q9H977 334 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 C19orf25Q9UFG5 118 aaPredicted RBP12.29□□□□□ -0.44
HMGB1-202ENST00000339872 IL20RAQ9UHF4 553 aa12.29□□□□□ -0.44
HMGB1-202ENST00000339872 CARD8Q9Y2G2 431 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms