RNA–Protein interactions for RNA: ENST00000292535.11

CUX1-201, Transcript of cut like homeobox 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CUX1, Length 13,747 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-201ENST00000292535 MSMO1Q15800 293 aa8.8□□□□□ -1
CUX1-201ENST00000292535 PRSS48Q7RTY5 328 aa8.8□□□□□ -1
CUX1-201ENST00000292535 SLC43A2Q8N370 569 aa8.8□□□□□ -1
CUX1-201ENST00000292535 PREBQ9HCU5 417 aa8.8□□□□□ -1
CUX1-201ENST00000292535 LHX6Q9UPM6 363 aa8.8□□□□□ -1
CUX1-201ENST00000292535 KCTD3Q9Y597 815 aa8.8□□□□□ -1
CUX1-201ENST00000292535 ROBO1Q9Y6N7 1651 aa8.8□□□□□ -1
CUX1-201ENST00000292535 NPBWR1P48145 328 aa8.79□□□□□ -1
CUX1-201ENST00000292535 PROX2Q3B8N5 592 aa8.79□□□□□ -1
CUX1-201ENST00000292535 SCAMP4Q969E2 229 aa8.79□□□□□ -1
CUX1-201ENST00000292535 ANKRD19PQ9H560 264 aa8.79□□□□□ -1
CUX1-201ENST00000292535 ASF1BQ9NVP2 202 aa8.79□□□□□ -1
CUX1-201ENST00000292535 LUZP4Q9P127 313 aa8.79□□□□□ -1
CUX1-201ENST00000292535 UBBP0CG47 229 aa8.79□□□□□ -1
CUX1-201ENST00000292535 UBCP0CG48 685 aaKnown RBP8.79□□□□□ -1
CUX1-201ENST00000292535 MTHFD2P13995 350 aa8.79□□□□□ -1
CUX1-201ENST00000292535 RPS27AP62979 156 aaKnown RBP8.79□□□□□ -1
CUX1-201ENST00000292535 UBA52P62987 128 aaKnown RBP8.79□□□□□ -1
CUX1-201ENST00000292535 DSC1Q08554 894 aa8.79□□□□□ -1
CUX1-201ENST00000292535 CMIPQ8IY22 773 aa8.79□□□□□ -1
CUX1-201ENST00000292535 UMODL1-AS1Q8N2C9 162 aa8.79□□□□□ -1
CUX1-201ENST00000292535 BTBD17A6NE02 478 aa8.79□□□□□ -1
CUX1-201ENST00000292535 GALR3O60755 368 aaPredicted RBP8.79□□□□□ -1
CUX1-201ENST00000292535 ZNF254O75437 659 aa8.79□□□□□ -1
CUX1-201ENST00000292535 WDPCPO95876 746 aa8.79□□□□□ -1
CUX1-201ENST00000292535 TGM6O95932 706 aa8.79□□□□□ -1
CUX1-201ENST00000292535 EGFP01133 1207 aa8.79□□□□□ -1
CUX1-201ENST00000292535 RDH14Q9HBH5 336 aa8.79□□□□□ -1
CUX1-201ENST00000292535 NXT1Q9UKK6 140 aaKnown RBP8.79□□□□□ -1
CUX1-201ENST00000292535 FZD9O00144 591 aa8.79□□□□□ -1
CUX1-201ENST00000292535 RFPL2O75678 378 aa8.79□□□□□ -1
CUX1-201ENST00000292535 TACR3P29371 465 aa8.79□□□□□ -1
CUX1-201ENST00000292535 PRKAR1BP31321 381 aa8.79□□□□□ -1
CUX1-201ENST00000292535 HTR2BP41595 481 aa8.79□□□□□ -1
CUX1-201ENST00000292535 NR4A2P43354 598 aa8.79□□□□□ -1
CUX1-201ENST00000292535 P2RX1P51575 399 aa8.79□□□□□ -1
CUX1-201ENST00000292535 ZNF648Q5T619 568 aaPredicted RBP8.79□□□□□ -1
CUX1-201ENST00000292535 PNCKQ6P2M8 343 aa8.79□□□□□ -1
CUX1-201ENST00000292535 NLGN4YQ8NFZ3 816 aaPredicted RBP8.79□□□□□ -1
CUX1-201ENST00000292535 OR13J1Q8NGT2 312 aa8.79□□□□□ -1
CUX1-201ENST00000292535 SMAP2Q8WU79 429 aaPredicted RBP8.79□□□□□ -1
CUX1-201ENST00000292535 DMRT3Q9NQL9 472 aa8.79□□□□□ -1
CUX1-201ENST00000292535 SMCO4Q9NRQ5 59 aa8.79□□□□□ -1
CUX1-201ENST00000292535 HHLA2Q9UM44 414 aa8.79□□□□□ -1
CUX1-201ENST00000292535 B3GNT3Q9Y2A9 372 aa8.79□□□□□ -1
CUX1-201ENST00000292535 XCR1P46094 333 aa8.79□□□□□ -1
CUX1-201ENST00000292535 KIAA1211LQ6NV74 962 aa8.79□□□□□ -1
CUX1-201ENST00000292535 MYLIPQ8WY64 445 aa8.79□□□□□ -1
CUX1-201ENST00000292535 CA14Q9ULX7 337 aa8.79□□□□□ -1
CUX1-201ENST00000292535 YLPM1P49750 1951 aaKnown RBP8.79□□□□□ -1
CUX1-201ENST00000292535 P2RX6O15547 441 aa8.79□□□□□ -1
CUX1-201ENST00000292535 DCUN1D4Q92564 292 aa8.79□□□□□ -1
CUX1-201ENST00000292535 MUS81Q96NY9 551 aa8.79□□□□□ -1
CUX1-201ENST00000292535 YARS2Q9Y2Z4 477 aaKnown RBP8.79□□□□□ -1
CUX1-201ENST00000292535 KIR2DS5A0A0G2JLQ3 304 aa8.79□□□□□ -1
CUX1-201ENST00000292535 A0A0G2JNG1 304 aa8.79□□□□□ -1
CUX1-201ENST00000292535 A6NL46 340 aa8.79□□□□□ -1
CUX1-201ENST00000292535 A8MV72 311 aaPredicted RBP8.79□□□□□ -1
CUX1-201ENST00000292535 C17orf105B2RV13 164 aa8.79□□□□□ -1
CUX1-201ENST00000292535 KIR2DS3K7RE56 304 aa8.79□□□□□ -1
CUX1-201ENST00000292535 TPPPO94811 219 aa8.79□□□□□ -1
CUX1-201ENST00000292535 TOXO94900 526 aa8.79□□□□□ -1
CUX1-201ENST00000292535 CBX7O95931 251 aa8.79□□□□□ -1
CUX1-201ENST00000292535 ABOP16442 354 aa8.79□□□□□ -1
CUX1-201ENST00000292535 NFYAP23511 347 aaPredicted RBP8.79□□□□□ -1
CUX1-201ENST00000292535 MRPS10P82664 201 aaKnown RBP8.79□□□□□ -1
CUX1-201ENST00000292535 KIR2DS5Q14953 304 aa8.79□□□□□ -1
CUX1-201ENST00000292535 SFRP5Q5T4F7 317 aa8.79□□□□□ -1
CUX1-201ENST00000292535 TOMM40LQ969M1 308 aa8.79□□□□□ -1
CUX1-201ENST00000292535 HEBP1Q9NRV9 189 aa8.79□□□□□ -1
CUX1-201ENST00000292535 ZDHHC18Q9NUE0 388 aa8.79□□□□□ -1
CUX1-201ENST00000292535 PLCXD1Q9NUJ7 323 aa8.79□□□□□ -1
CUX1-201ENST00000292535 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.79□□□□□ -1
CUX1-201ENST00000292535 BDP1A6H8Y1 2624 aa8.79□□□□□ -1
CUX1-201ENST00000292535 A0A0J9YY10 115 aa8.79□□□□□ -1
CUX1-201ENST00000292535 SULT1C2O00338 296 aa8.79□□□□□ -1
CUX1-201ENST00000292535 CD79BP40259 229 aa8.79□□□□□ -1
CUX1-201ENST00000292535 ATP1B3P54709 279 aa8.79□□□□□ -1
CUX1-201ENST00000292535 TRA2BP62995 288 aaKnown RBP8.79□□□□□ -1
CUX1-201ENST00000292535 C1orf61Q13536 156 aa8.79□□□□□ -1
CUX1-201ENST00000292535 IL17RDQ8NFM7 739 aa8.79□□□□□ -1
CUX1-201ENST00000292535 SERTAD4Q9NUC0 356 aa8.79□□□□□ -1
CUX1-201ENST00000292535 ZDHHC7Q9NXF8 308 aa8.79□□□□□ -1
CUX1-201ENST00000292535 GATMP50440 423 aa8.79□□□□□ -1
CUX1-201ENST00000292535 FIGNL1Q6PIW4 674 aa8.79□□□□□ -1
CUX1-201ENST00000292535 BPHLQ86WA6 291 aaPredicted RBP8.79□□□□□ -1
CUX1-201ENST00000292535 ZFAND2BQ8WV99 257 aa8.79□□□□□ -1
CUX1-201ENST00000292535 MICAQ29983 383 aa8.79□□□□□ -1
CUX1-201ENST00000292535 CNIH2Q6PI25 160 aa8.79□□□□□ -1
CUX1-201ENST00000292535 HRASLSQ9HDD0 168 aa8.79□□□□□ -1
CUX1-201ENST00000292535 NUDT21O43809 227 aaKnown RBP8.78□□□□□ -1
CUX1-201ENST00000292535 HABP2Q14520 560 aaPredicted RBP8.78□□□□□ -1
CUX1-201ENST00000292535 TECRLQ5HYJ1 363 aa8.78□□□□□ -1
CUX1-201ENST00000292535 NDUFAF5Q5TEU4 345 aa8.78□□□□□ -1
CUX1-201ENST00000292535 HMGN2P46Q86SG4 172 aa8.78□□□□□ -1
CUX1-201ENST00000292535 FAM160A2Q8N612 972 aaPredicted RBP8.78□□□□□ -1
CUX1-201ENST00000292535 GDF1P27539 372 aa8.78□□□□□ -1
CUX1-201ENST00000292535 TMEM244Q5VVB8 128 aa8.78□□□□□ -1
CUX1-201ENST00000292535 PDZD3Q86UT5 571 aa8.78□□□□□ -1
CUX1-201ENST00000292535 SYNPRQ8TBG9 265 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms