RNA–Protein interactions for RNA: ENST00000269138.9

SS18-202, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-202ENST00000269138 TMEM44Q2T9K0 475 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 PLPPR5Q32ZL2 321 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 LIN52Q52LA3 116 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 EMC4Q5J8M3 183 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 ZNF311Q5JNZ3 666 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 C1QL3Q5VWW1 255 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 RAET1LQ5VY80 246 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 VASNQ6EMK4 673 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 C3P1Q6ZMU1 363 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 TRPM8Q7Z2W7 1104 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 COMTD1Q86VU5 262 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 OR5W2Q8NH69 310 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 FAM57AQ8TBR7 257 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 POC1BQ8TC44 478 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 ABTB1Q969K4 478 aaPredicted RBP11.55□□□□□ -0.56
SS18-202ENST00000269138 REXO5Q96IC2 774 aaKnown RBP11.55□□□□□ -0.56
SS18-202ENST00000269138 SFXN2Q96NB2 322 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 TIMP4Q99727 224 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 HHATLQ9HCP6 504 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 PNPLA3Q9NST1 481 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 DNAJB12Q9NXW2 375 aaKnown RBP11.55□□□□□ -0.56
SS18-202ENST00000269138 SH3BGRL2Q9UJC5 107 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 TINAGQ9UJW2 476 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 PACSIN3Q9UKS6 424 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 ACAD8Q9UKU7 415 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 ZNF232Q9UNY5 417 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 FREM3P0C091 2139 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 MED12Q93074 2177 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 DNAJC13O75165 2243 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 OR2M5A3KFT3 312 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 CDHR4A6H8M9 788 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 FAM220BPB1ANY3 271 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 M0QX08 132 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 AP3D1O14617 1153 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 DNAJA2O60884 412 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 THBS1P07996 1170 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 GKN3PP0CG01 181 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 RYKP34925 604 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 ZNF41P51814 821 aaPredicted RBP11.55□□□□□ -0.56
SS18-202ENST00000269138 SUMO3P55854 103 aaPredicted RBP11.55□□□□□ -0.56
SS18-202ENST00000269138 DMTNQ08495 405 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 LARS2Q15031 903 aaKnown RBP11.55□□□□□ -0.56
SS18-202ENST00000269138 GXYLT1Q4G148 440 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 GLIPR1L2Q4G1C9 344 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 Q6ZPB1 254 aaPredicted RBP11.55□□□□□ -0.56
SS18-202ENST00000269138 ARPINQ7Z6K5 226 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 CD163Q86VB7 1156 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 DOLPP1Q86YN1 238 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 CMIPQ8IY22 773 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 MICU2Q8IYU8 434 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 OR2T12Q8NG77 320 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 SPATA9Q9BWV2 254 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 IFT52Q9Y366 437 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 ZNF337Q9Y3M9 751 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 POLEQ07864 2286 aa11.55□□□□□ -0.56
SS18-202ENST00000269138 A0A087WZY1 265 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 TRGV8A0A0C4DH27 118 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 OR14I1A6ND48 311 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 B2RBV5 119 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 FRS3O43559 492 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 MFN2O95140 757 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 EPPINO95925 133 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 OPN1SWP03999 348 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 STSP08842 583 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 PRG2P13727 222 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 IL11P20809 199 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 PSMA4P25789 261 aaKnown RBP11.54□□□□□ -0.56
SS18-202ENST00000269138 GSK3BP49841 420 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 CRYBA2P53672 197 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 HOXC5Q00444 222 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 FOXF1Q12946 379 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 CBFBQ13951 182 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 ESPL1Q14674 2120 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 QPRTQ15274 297 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 GLYR1Q49A26 553 aaPredicted RBP11.54□□□□□ -0.56
SS18-202ENST00000269138 NHSL2Q5HYW2 709 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 RNF220Q5VTB9 566 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 RINLQ6ZS11 566 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 KRT73Q86Y46 540 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 SMYD1Q8NB12 490 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 TOR1AIP2Q8NFQ8 470 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 TAMM41Q96BW9 452 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 SARAFQ96BY9 339 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 DTNBP1Q96EV8 351 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 WDYHV1Q96HA8 205 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 RNF145Q96MT1 663 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 ZNF607Q96SK3 696 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 CACYBPQ9HB71 228 aaKnown RBP11.54□□□□□ -0.56
SS18-202ENST00000269138 ALKBH4Q9NXW9 302 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 ADA2Q9NZK5 511 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 TMEM181Q9P2C4 612 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 ABCD2Q9UBJ2 740 aa11.54□□□□□ -0.56
SS18-202ENST00000269138 FAM47E-STBD1D6RA91 191 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 PRRG2O14669 202 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 BCKDKO14874 412 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 EFNA2O43921 213 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 UBOX5O94941 541 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 ACTL6AO96019 429 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 OPN1LWP04000 364 aa11.53□□□□□ -0.56
SS18-202ENST00000269138 PRKCAP17252 672 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms