RNA–Protein interactions for RNA: ENST00000262554.6

SPTLC1-201, Transcript of serine palmitoyltransferase long chain base subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPTLC1, Length 1,894 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTLC1-201ENST00000262554 ATP13A2Q9NQ11 1180 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 CUTCQ9NTM9 273 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 DNAJB12Q9NXW2 375 aaKnown RBP11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 PRODH2Q9UF12 536 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 DAPK2Q9UIK4 370 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 CBLCQ9ULV8 474 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 PEX16Q9Y5Y5 336 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 CSNK1G3Q9Y6M4 447 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 SPAG17Q6Q759 2223 aa11.95□□□□□ -0.5
SPTLC1-201ENST00000262554 A0A1B0GWA3 101 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 ANKRD33BA6NCL7 494 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 BCAT2O15382 392 aaPredicted RBP11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 OR2B3O76000 313 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 CT45A8P0DMV1 189 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 CT45A9P0DMV2 189 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 HOXB1P14653 301 aaPredicted RBP11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 BCKDHBP21953 392 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 ATP6V1E1P36543 226 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 RBM34P42696 430 aaKnown RBP11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 ACAA2P42765 397 aaKnown RBP11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 ATP12AP54707 1039 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 OR1D5P58170 312 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 HSD11B2P80365 405 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 BNC1Q01954 994 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 KCNAB1Q14722 419 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 TRIM16LQ309B1 348 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 CT45A2Q5DJT8 189 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 OR2G6Q5TZ20 316 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 CXXC5Q7LFL8 322 aaKnown RBP11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 CPOQ8IVL8 374 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 GID4Q8IVV7 300 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 LSMEM1Q8N8F7 131 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 DNASE2BQ8WZ79 361 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 PTCHD1Q96NR3 888 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 REPIN1Q9BWE0 567 aaKnown RBP11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 YIPF2Q9BWQ6 316 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 FLRT3Q9NZU0 649 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 GMEB2Q9UKD1 530 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 TMEM184BQ9Y519 407 aaPredicted RBP11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 SPIN1Q9Y657 262 aaPredicted RBP11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 MAU2Q9Y6X3 613 aa11.94□□□□□ -0.5
SPTLC1-201ENST00000262554 IGHV1OR21-1A0A087WYE8 117 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 FAM86C2PA6NEL3 165 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 TMEM150CB9EJG8 249 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 NPIPB9F8W1W9 429 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 BHLHE40O14503 412 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 NUDT21O43809 227 aaKnown RBP11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 DUX1O43812 170 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 HCN1O60741 890 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 SLC2A10O95528 541 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 FUT1P19526 365 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 TBXA2RP21731 343 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 SLC1A3P43003 542 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 FXYD6P3P58550 94 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 ZNF45Q02386 682 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 NNATQ16517 81 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 ALG10BQ5I7T1 473 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 WDR45BQ5MNZ6 344 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 SMARCD3Q6STE5 483 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 SHFQ7M4L6 423 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 PLXDC1Q8IUK5 500 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 LNX2Q8N448 690 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 BCORP1Q8N888 145 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 ZNF615Q8N8J6 731 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 OR7G1Q8NGA0 311 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 GATAD2BQ8WXI9 593 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 CLDN23Q96B33 292 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 OTULINQ96BN8 352 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 PPP1R14BQ96C90 147 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 IFT27Q9BW83 186 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 MROQ9BYG7 248 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 NUAK2Q9H093 628 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 FN3KQ9H479 309 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 SIAEQ9HAT2 523 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 HINT3Q9NQE9 182 aaKnown RBP11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 CRNNQ9UBG3 495 aaPredicted RBP11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 RPS6KB2Q9UBS0 482 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 EXOGQ9Y2C4 368 aaKnown RBP11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 SAGE2PA6NJ88 616 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 C17orf105B2RV13 164 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 ZNF670-ZNF695F2Z2N8 137 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 WWP2O00308 870 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 LIMS3P0CW19 117 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 LIMS4P0CW20 117 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 ALAS2P22557 587 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 CXCL12P48061 93 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 SEPHS1P49903 392 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 PERM1Q5SV97 790 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 ULK3Q6PHR2 472 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 TTLL10Q6ZVT0 673 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 MINDY2Q8NBR6 621 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 PSD4Q8NDX1 1056 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 BBS1Q8NFJ9 593 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 OR13C2Q8NGS9 318 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 UFD1Q92890 307 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 ARSGQ96EG1 525 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 MVB12AQ96EY5 273 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 MEPEQ9NQ76 525 aaPredicted RBP11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 SIGLEC7Q9Y286 467 aa11.93□□□□□ -0.5
SPTLC1-201ENST00000262554 MMACHCQ9Y4U1 282 aa11.93□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms