RNA–Protein interactions for RNA: ENST00000254667.7

PTPRE-201, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRE, Length 5,331 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-201ENST00000254667 LSAMPQ13449 338 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 PTCRAQ6ISU1 281 aaPredicted RBP17.76■□□□□ 0.43
PTPRE-201ENST00000254667 VRK2Q86Y07 508 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 EDAQ92838 391 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 BOKQ9UMX3 212 aaPredicted RBP17.76■□□□□ 0.43
PTPRE-201ENST00000254667 B3GNT3Q9Y2A9 372 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 HMGA1P17096 107 aaKnown RBP17.76■□□□□ 0.43
PTPRE-201ENST00000254667 SOX3P41225 446 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 HES5Q5TA89 166 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 SHISA6Q6ZSJ9 500 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 BEST3Q8N1M1 668 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 KLHL13Q9P2N7 655 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 NRAPQ86VF7 1730 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 TRAV18A0A075B6X5 111 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 SLC26A5P58743 744 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 NLGN4YQ8NFZ3 816 aaPredicted RBP17.76■□□□□ 0.43
PTPRE-201ENST00000254667 ZC3H10Q96K80 434 aaKnown RBP17.76■□□□□ 0.43
PTPRE-201ENST00000254667 MS4A8Q9BY19 250 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 A0A1B0GTW7 788 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 NAP1L6A6NFF2 107 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 SCRG1O75711 98 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 GDF1P27539 372 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 EPHA4P54764 986 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 PSPHP78330 225 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 LRRC37A5PQ49AS3 106 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 SBSNQ6UWP8 590 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 GSG1LQ6UXU4 331 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 MEPCEQ7L2J0 689 aaKnown RBP17.76■□□□□ 0.43
PTPRE-201ENST00000254667 FNDC8Q8TC99 324 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 ZIC5Q96T25 663 aa17.76■□□□□ 0.43
PTPRE-201ENST00000254667 FAM171A2A8MVW0 826 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 AMY2AP04746 511 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 MZT1Q08AG7 82 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 CCDC71LQ8N9Z2 235 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 ISL2Q96A47 359 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 ELSPBP1Q96BH3 223 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 POLE4Q9NR33 117 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 SLC22A7Q9Y694 548 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 TJP1Q07157 1748 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 RAC2P15153 192 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 PXKQ7Z7A4 578 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 LSMEM2Q8N112 164 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 EID2Q8N6I1 236 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 TREX2Q9BQ50 279 aaPredicted RBP17.75■□□□□ 0.43
PTPRE-201ENST00000254667 C1GALT1Q9NS00 363 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 ABRACLQ9P1F3 81 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 ENPP5Q9UJA9 477 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 IL7P13232 177 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 SLC2A5P22732 501 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 CDK2P24941 298 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 GCH1P30793 250 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 PBX2P40425 430 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 KIAA1024LP59773 190 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 PCBD1P61457 104 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 MANEAQ5SRI9 462 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 CCNJQ5T5M9 372 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 DNAAF1Q8NEP3 725 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 FOXRED1Q96CU9 486 aaPredicted RBP17.75■□□□□ 0.43
PTPRE-201ENST00000254667 MAELQ96JY0 434 aaKnown RBP17.75■□□□□ 0.43
PTPRE-201ENST00000254667 CDC6Q99741 560 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 HTR3BO95264 441 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 CACNA1SQ13698 1873 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 PDE7AQ13946 482 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 RHEBQ15382 184 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 COL28A1Q2UY09 1125 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 UBQLN2Q9UHD9 624 aa17.75■□□□□ 0.43
PTPRE-201ENST00000254667 ATP6V1G1O75348 118 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 ACPPP15309 386 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 GARNL3Q5VVW2 1013 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 BOLLQ8N9W6 283 aaKnown RBP17.74■□□□□ 0.43
PTPRE-201ENST00000254667 ASB17Q8WXJ9 295 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 PLEK2Q9NYT0 353 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 TNFRSF10CO14798 259 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 ZNF264O43296 627 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 IFNA2P01563 188 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 IGHG1P01857 330 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 TSPAN31Q12999 210 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 ZNF77Q15935 545 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 DCAF12Q5T6F0 453 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 ZNF691Q5VV52 312 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 SEMA6CQ9H3T2 930 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 NHSL1Q5SYE7 1610 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 KCTD20Q7Z5Y7 419 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 OR51T1Q8NGJ9 327 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 ARL5BQ96KC2 179 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 FAM71F1Q96KD3 344 aaPredicted RBP17.74■□□□□ 0.43
PTPRE-201ENST00000254667 LMF1Q96S06 567 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 DDX31Q9H8H2 851 aaKnown RBP17.74■□□□□ 0.43
PTPRE-201ENST00000254667 MED17Q9NVC6 651 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 MMACHCQ9Y4U1 282 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 STT3AP46977 705 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 EEF1A2Q05639 463 aaKnown RBP17.74■□□□□ 0.43
PTPRE-201ENST00000254667 CNN3Q15417 329 aaKnown RBP17.74■□□□□ 0.43
PTPRE-201ENST00000254667 TMEM150AQ86TG1 271 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 VRK1Q99986 396 aaPredicted RBP17.74■□□□□ 0.43
PTPRE-201ENST00000254667 LOC102723532A0A0G2JNH3 316 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 F5H5K5 113 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 SNU13P55769 128 aaKnown RBP17.74■□□□□ 0.43
PTPRE-201ENST00000254667 SPARTQ8N0X7 666 aa17.74■□□□□ 0.43
PTPRE-201ENST00000254667 RNF175Q8N4F7 328 aa17.74■□□□□ 0.43
Retrieved 100 of 20,778 RNA–protein pairs in 43 ms