RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 AGAP5A6NIR3 686 aa14.55□□□□□ -0.08
CPSF1-213ENST00000620219 G3V3Y1 287 aa14.55□□□□□ -0.08
CPSF1-213ENST00000620219 CCDC159P0C7I6 412 aa14.55□□□□□ -0.08
CPSF1-213ENST00000620219 ITGAMP11215 1152 aa14.55□□□□□ -0.08
CPSF1-213ENST00000620219 NID1P14543 1247 aa14.55□□□□□ -0.08
CPSF1-213ENST00000620219 PRKAR1BP31321 381 aa14.55□□□□□ -0.08
CPSF1-213ENST00000620219 RUNX1T1Q06455 604 aa14.55□□□□□ -0.08
CPSF1-213ENST00000620219 SLCO6A1Q86UG4 719 aa14.55□□□□□ -0.08
CPSF1-213ENST00000620219 LHFPL3Q86UP9 236 aa14.55□□□□□ -0.08
CPSF1-213ENST00000620219 OR2T33Q8NG76 320 aa14.55□□□□□ -0.08
CPSF1-213ENST00000620219 KLHL6Q8WZ60 621 aa14.55□□□□□ -0.08
CPSF1-213ENST00000620219 OSTF1Q92882 214 aa14.55□□□□□ -0.08
CPSF1-213ENST00000620219 ZNF559Q9BR84 538 aa14.55□□□□□ -0.08
CPSF1-213ENST00000620219 BCL2L10Q9HD36 194 aa14.55□□□□□ -0.08
CPSF1-213ENST00000620219 DTX4Q9Y2E6 619 aa14.55□□□□□ -0.08
CPSF1-213ENST00000620219 MMACHCQ9Y4U1 282 aa14.55□□□□□ -0.08
CPSF1-213ENST00000620219 TMEM184BQ9Y519 407 aaPredicted RBP14.55□□□□□ -0.08
CPSF1-213ENST00000620219 COL6A3P12111 3177 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 CENPVL1A0A0U1RR11 272 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 FFAR1O14842 300 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 GDF9O60383 454 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 UBL4AP11441 157 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 MAPK11Q15759 364 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 PROX2Q3B8N5 592 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 ARHGAP22Q7Z5H3 698 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 DUSP19Q8WTR2 217 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 RPL3LQ92901 407 aaKnown RBP14.54□□□□□ -0.08
CPSF1-213ENST00000620219 BPIFA2Q96DR5 249 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 EDEM2Q9BV94 578 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 VPS13AQ96RL7 3174 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 LINC00854A0A1B0GVQ3 168 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 A0A1B0GWA3 101 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 J3QRK9 145 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 ALOX12BO75342 701 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 PEPDP12955 493 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 FUT1P19526 365 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 PGBD2Q6P3X8 592 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 ZER1Q7Z7L7 766 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 JAZF1Q86VZ6 243 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 BCORP1Q8N888 145 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 OR4K17Q8NGC6 315 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 OR8J1Q8NGP2 316 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 SAP25Q8TEE9 199 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 C14orf105Q9NVL8 296 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 PAK1IP1Q9NWT1 392 aaPredicted RBP14.54□□□□□ -0.08
CPSF1-213ENST00000620219 ANKRD10Q9NXR5 420 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 SMIM30A4D0T7 59 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 ENTPD6O75354 484 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 AVPR2P30518 371 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 TRHRP34981 398 aaPredicted RBP14.54□□□□□ -0.08
CPSF1-213ENST00000620219 ALDH3B2P48448 385 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 GIPRP48546 466 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 MXD1Q05195 221 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 KEAP1Q14145 624 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 NANOGNBQ7Z5D8 188 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 MARCH3Q86UD3 253 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 GALNT6Q8NCL4 622 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 ERVMER34-1Q9H9K5 563 aa14.54□□□□□ -0.08
CPSF1-213ENST00000620219 MED12Q93074 2177 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 A0A087WV62 115 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 EFCAB10A6NFE3 127 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 CPNE3O75131 537 aaKnown RBP14.53□□□□□ -0.08
CPSF1-213ENST00000620219 UTS2O95399 124 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 PLGP00747 810 aaPredicted RBP14.53□□□□□ -0.08
CPSF1-213ENST00000620219 HMGN1P05114 100 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 NCS1P62166 190 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 PRAMEF20Q5VT98 475 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 CCDC80Q76M96 950 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 OR13C2Q8NGS9 318 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 OR4K13Q8NH42 304 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 SLC46A1Q96NT5 459 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 SAP130Q9H0E3 1048 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 A0A1W2PQM1 296 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 SERINC4A6NH21 518 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 TCN2P20062 427 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 S100A5P33763 92 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 EMDP50402 254 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 PLBD1Q6P4A8 553 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 ZCCHC12Q6PEW1 402 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 IL20RBQ6UXL0 311 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 OR14A16Q8NHC5 309 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 PFN4Q8NHR9 129 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 IPCEF1Q8WWN9 437 aaPredicted RBP14.53□□□□□ -0.08
CPSF1-213ENST00000620219 STACQ99469 402 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 IER2Q9BTL4 223 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 POLR1DQ9Y2S0 133 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 PRR19A6NJB7 356 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 PRR23D1E9PI22 279 aaPredicted RBP14.53□□□□□ -0.08
CPSF1-213ENST00000620219 H3BML4 177 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 HYAL3O43820 417 aaPredicted RBP14.53□□□□□ -0.08
CPSF1-213ENST00000620219 PFDN1O60925 122 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 GYPBP06028 91 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 PRR23D2P0DMB1 279 aaPredicted RBP14.53□□□□□ -0.08
CPSF1-213ENST00000620219 RPS15P62841 145 aaKnown RBP14.53□□□□□ -0.08
CPSF1-213ENST00000620219 ARMCX4Q5H9R4 360 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 DHRS13Q6UX07 377 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 ERI1Q8IV48 349 aaKnown RBP14.53□□□□□ -0.08
CPSF1-213ENST00000620219 RFKQ969G6 155 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 HRASLS5Q96KN8 279 aa14.53□□□□□ -0.08
CPSF1-213ENST00000620219 NUDT9Q9BW91 350 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms