RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 NOX1Q9Y5S8 564 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 CACNG2Q9Y698 323 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 ZNF850A8MQ14 1090 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 C17orf105B2RV13 164 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 SLC22A5O76082 557 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 ACPPP15309 386 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 IRF4Q15306 451 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 TATDN3Q17R31 274 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 CFAP77Q6ZQR2 320 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 BORCS8Q96FH0 119 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 BMFQ96LC9 184 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 ADOQ96SZ5 270 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 CENPOQ9BU64 300 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 MARCH5Q9NX47 278 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 CCL26Q9Y258 94 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 NAALAD2Q9Y3Q0 740 aa13.15□□□□□ -0.3
CPSF1-212ENST00000616140 SEC14L5O43304 696 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 TFP02787 698 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 ALDH3B2P48448 385 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 PGFP49763 221 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 RGS19P49795 217 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 TLE3Q04726 772 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 HOXB13Q92826 284 aaPredicted RBP13.14□□□□□ -0.31
CPSF1-212ENST00000616140 NECAB3Q96P71 396 aaPredicted RBP13.14□□□□□ -0.31
CPSF1-212ENST00000616140 OR51J1Q9H342 316 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 COQ3Q9NZJ6 369 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 PSORS1C1Q9UIG5 152 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 SPTA1P02549 2419 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 ACP2P11117 423 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 GPX2P18283 190 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 XCR1P46094 333 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 KCNJ10P78508 379 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 FAM83HQ6ZRV2 1179 aaPredicted RBP13.14□□□□□ -0.31
CPSF1-212ENST00000616140 BEST4Q8NFU0 473 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 WFDC5Q8TCV5 224 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 C16orf58Q96GQ5 468 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 FBRSQ9HAH7 460 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 LAMA4Q16363 1823 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 C17orf113A0A1B0GUU1 675 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 CENPBD1B2RD01 187 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 ARPC1BO15143 372 aaKnown RBP13.14□□□□□ -0.31
CPSF1-212ENST00000616140 HMGB3O15347 200 aaKnown RBP13.14□□□□□ -0.31
CPSF1-212ENST00000616140 TAPBPO15533 448 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 RAB3DO95716 219 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 F11P03951 625 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 FURINP09958 794 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 PER3P56645 1201 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 INAVAQ3KP66 663 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 CCSMST1Q4G0I0 132 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 OTUD1Q5VV17 481 aaPredicted RBP13.14□□□□□ -0.31
CPSF1-212ENST00000616140 TBPL2Q6SJ96 375 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 FAM198BQ6UWH4 519 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 INSM2Q96T92 566 aaPredicted RBP13.14□□□□□ -0.31
CPSF1-212ENST00000616140 MEPEQ9NQ76 525 aaPredicted RBP13.14□□□□□ -0.31
CPSF1-212ENST00000616140 HSFX1Q9UBD0 423 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 RARRES3Q9UL19 164 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 SCML1Q9UN30 329 aa13.14□□□□□ -0.31
CPSF1-212ENST00000616140 YARS2Q9Y2Z4 477 aaKnown RBP13.14□□□□□ -0.31
CPSF1-212ENST00000616140 SLC33A1O00400 549 aaPredicted RBP13.13□□□□□ -0.31
CPSF1-212ENST00000616140 AIFM1O95831 613 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 PNMTP11086 282 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 GIFP27352 417 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 FGL1Q08830 312 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 TSPAN31Q12999 210 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 GNMTQ14749 295 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 COX20Q5RI15 118 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 ATAD3CQ5T2N8 411 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 METTL11BQ5VVY1 283 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 BEND4Q6ZU67 534 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 ANKLE1Q8NAG6 615 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 OR52R1Q8NGF1 315 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 CHPT1Q8WUD6 406 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 CXorf36Q9H7Y0 433 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 SLC16A6O15403 523 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 SYT7O43581 403 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 SC5DO75845 299 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 GPR75O95800 540 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 ZNF43P17038 809 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 CD34P28906 385 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 EEF1A1P5Q5VTE0 462 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 PRAMEF8Q5VWM4 474 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 PRAMEF7Q5VXH5 474 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 FAM205BPQ63HN1 556 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 LAS2Q8IYD9 372 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 MFSD8Q8NHS3 518 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 ZNF417Q8TAU3 575 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 SFXN5Q8TD22 340 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 UBTD2Q8WUN7 234 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 OR5M11Q96RB7 305 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 VDAC3Q9Y277 283 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 ANKRD28O15084 1053 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 LILRB3O75022 631 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 MAOBP27338 520 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 PXNP49023 591 aaPredicted RBP13.13□□□□□ -0.31
CPSF1-212ENST00000616140 GPR19Q15760 415 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 ZNF322Q6U7Q0 402 aaPredicted RBP13.13□□□□□ -0.31
CPSF1-212ENST00000616140 NIPSNAP1Q9BPW8 284 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 ZNF442Q9H7R0 627 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 A0A0J9YY10 115 aa13.13□□□□□ -0.31
CPSF1-212ENST00000616140 SLC9B1P1A6NJY1 282 aa13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms