RNA–Protein interactions for RNA: ENST00000612050.4

CBWD3-208, Transcript of COBW domain containing 3, humanhuman

TSL 1 (best)

Gene CBWD3, Length 1,440 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBWD3-208ENST00000612050 EXOSC6Q5RKV6 272 aaKnown RBP11.14□□□□□ -0.63
CBWD3-208ENST00000612050 FBXW10Q5XX13 1052 aa11.14□□□□□ -0.63
CBWD3-208ENST00000612050 SAXO2Q658L1 398 aa11.14□□□□□ -0.63
CBWD3-208ENST00000612050 TNFAIP8L2Q6P589 184 aaPredicted RBP11.14□□□□□ -0.63
CBWD3-208ENST00000612050 APOOLQ6UXV4 268 aa11.14□□□□□ -0.63
CBWD3-208ENST00000612050 EIF3MQ7L2H7 374 aaKnown RBP11.14□□□□□ -0.63
CBWD3-208ENST00000612050 DMRTC2Q8IXT2 367 aaPredicted RBP11.14□□□□□ -0.63
CBWD3-208ENST00000612050 RFWD2Q8NHY2 731 aa11.14□□□□□ -0.63
CBWD3-208ENST00000612050 TMEM234Q8WY98 164 aa11.14□□□□□ -0.63
CBWD3-208ENST00000612050 INTS12Q96CB8 462 aaKnown RBP11.14□□□□□ -0.63
CBWD3-208ENST00000612050 NEURL3Q96EH8 262 aa11.14□□□□□ -0.63
CBWD3-208ENST00000612050 RAD21L1Q9H4I0 556 aa11.14□□□□□ -0.63
CBWD3-208ENST00000612050 MED17Q9NVC6 651 aa11.14□□□□□ -0.63
CBWD3-208ENST00000612050 THUMPD1Q9NXG2 353 aaKnown RBP11.14□□□□□ -0.63
CBWD3-208ENST00000612050 SLC35A3Q9Y2D2 325 aa11.14□□□□□ -0.63
CBWD3-208ENST00000612050 ZNF175Q9Y473 711 aa11.14□□□□□ -0.63
CBWD3-208ENST00000612050 ENO4A6NNW6 628 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 CYSRT1A8MQ03 144 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 SYT5O00445 386 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 CSTAP01040 98 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 PABPC4LP0CB38 370 aaKnown RBP11.13□□□□□ -0.63
CBWD3-208ENST00000612050 UQCRBP14927 111 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 H2AFXP16104 143 aaPredicted RBP11.13□□□□□ -0.63
CBWD3-208ENST00000612050 ELK4P28324 431 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 ADH6P28332 368 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 EIF1AXP47813 144 aaKnown RBP11.13□□□□□ -0.63
CBWD3-208ENST00000612050 POLR2JP52435 117 aaKnown RBP11.13□□□□□ -0.63
CBWD3-208ENST00000612050 ZNF136P52737 540 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 B3GALT5-AS1P59052 145 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 RAC1P63000 192 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 TFF3Q07654 80 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 PLPPR5Q32ZL2 321 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 SLC9B1Q4ZJI4 515 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 KLHL26Q53HC5 615 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 TTMPQ5BVD1 217 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 C6orf10Q5SRN2 563 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 ESPNLQ6ZVH7 1005 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 SEM1Q6ZVN7 128 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 TMEM200AQ86VY9 491 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 LIX1LQ8IVB5 337 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 GTPBP8Q8N3Z3 284 aaPredicted RBP11.13□□□□□ -0.63
CBWD3-208ENST00000612050 CNEP1R1Q8N9A8 125 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 C9orf106Q8NAJ2 232 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 OR5M1Q8NGP8 315 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 NUDT8Q8WV74 236 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 ROPN1LQ96C74 230 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 RNF145Q96MT1 663 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 SH3GL2Q99962 352 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 RTN4RQ9BZR6 473 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 RABEP2Q9H5N1 569 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 SDR39U1Q9NRG7 319 aaPredicted RBP11.13□□□□□ -0.63
CBWD3-208ENST00000612050 SERINC1Q9NRX5 453 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 FBXO34Q9NWN3 711 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 CALML5Q9NZT1 146 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 CLCF1Q9UBD9 225 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 PACSIN3Q9UKS6 424 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 MKLN1Q9UL63 735 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 TRIM33Q9UPN9 1127 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 CARD8Q9Y2G2 431 aa11.13□□□□□ -0.63
CBWD3-208ENST00000612050 SPIN1Q9Y657 262 aaPredicted RBP11.13□□□□□ -0.63
CBWD3-208ENST00000612050 NUP214P35658 2090 aaPredicted RBP11.13□□□□□ -0.63
CBWD3-208ENST00000612050 CACNA1DQ01668 2161 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 UTP20O75691 2785 aaKnown RBP11.12□□□□□ -0.63
CBWD3-208ENST00000612050 NPIPA5A0A0B4J1W7 369 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 SERINC4A6NH21 518 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 NPIPA7E9PJI5 369 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 SMNDC1O75940 238 aaKnown RBP eCLIP11.12□□□□□ -0.63
CBWD3-208ENST00000612050 GUSBP08236 651 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 NPIPA8P0DM63 369 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 NR2F1P10589 423 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 PGCP20142 388 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 SLC7A1P30825 629 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 CTBP2P56545 445 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 CLDN15P56746 228 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 ZNF117Q03924 483 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 PON3Q15166 354 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 CD226Q15762 336 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 FBXL19-AS1Q494R0 122 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 PDZK1Q5T2W1 519 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 EPGNQ6UW88 154 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 ZAR1Q86SH2 424 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 RNF130Q86XS8 419 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 GCNT2Q8N0V5 402 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 CLEC4FQ8N1N0 589 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 ZNF619Q8N2I2 560 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 ARFGAP2Q8N6H7 521 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 METTL25Q8N6Q8 603 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 RELL2Q8NC24 303 aaPredicted RBP11.12□□□□□ -0.63
CBWD3-208ENST00000612050 NAXEQ8NCW5 288 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 OR5W2Q8NH69 310 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 ZNF563Q8TA94 476 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 PMM1Q92871 262 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 MARK4Q96L34 752 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 MRGPRX4Q96LA9 322 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 MAGEB18Q96M61 343 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 CCDC28BQ9BUN5 200 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 RBM24Q9BX46 236 aaKnown RBP11.12□□□□□ -0.63
CBWD3-208ENST00000612050 TRIM8Q9BZR9 551 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 ZNF350Q9GZX5 532 aa11.12□□□□□ -0.63
CBWD3-208ENST00000612050 MCCC2Q9HCC0 563 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms