RNA–Protein interactions for RNA: ENST00000600868.5

UPF1-211, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-211ENST00000600868 MSX1P28360 303 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 CD97P48960 835 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 RNF144AP50876 292 aaPredicted RBP13.1□□□□□ -0.31
UPF1-211ENST00000600868 SKP2Q13309 424 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 NRF1Q16656 503 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 ST3GAL2Q16842 350 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 ASB18Q6ZVZ8 466 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 VTCN1Q7Z7D3 282 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 SPATA24Q86W54 205 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 SULF2Q8IWU5 870 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 ZNF440Q8IYI8 595 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 RBMXL3Q8N7X1 1067 aaKnown RBP13.1□□□□□ -0.31
UPF1-211ENST00000600868 WDSUB1Q8N9V3 476 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 GATSQ8NAP1 163 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 TOR1AIP2Q8NFQ8 470 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 OR10Q1Q8NGQ4 319 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 TPD52L3Q96J77 140 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 HSH2DQ96JZ2 352 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 ARHGDIGQ99819 225 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 HES7Q9BYE0 225 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 KLHL1Q9NR64 748 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 PPP4R1LQ9P1A2 415 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 TP53TG5Q9Y2B4 290 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 SLC9A8Q9Y2E8 581 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 CACNA1GO43497 2377 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 EML6Q6ZMW3 1958 aa13.1□□□□□ -0.31
UPF1-211ENST00000600868 DSPP15924 2871 aaKnown RBP13.1□□□□□ -0.31
UPF1-211ENST00000600868 A0A0G2JMM0 328 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 A0A1W2PPB8 328 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 A0A1W2PRS3 328 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 C2orf72A6NCS6 295 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 KIR3DP1A8MWS1 328 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 G3V3Y1 287 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 SNPHO15079 494 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 OIP5O43482 229 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 HCRTR2O43614 444 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 PEX1O43933 1283 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 UBTFL6P0CB48 400 aaPredicted RBP13.09□□□□□ -0.31
UPF1-211ENST00000600868 ELAVL4P26378 380 aaKnown RBP13.09□□□□□ -0.31
UPF1-211ENST00000600868 MAP1BP46821 2468 aaKnown RBP13.09□□□□□ -0.31
UPF1-211ENST00000600868 MASP1P48740 699 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 DNASE1L1P49184 302 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 P2RX1P51575 399 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 SUMO3P55854 103 aaPredicted RBP13.09□□□□□ -0.31
UPF1-211ENST00000600868 GPR85P60893 370 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 ACTR3P61158 418 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 ZNF117Q03924 483 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 CCNIQ14094 377 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 ZNF169Q14929 603 aaPredicted RBP13.09□□□□□ -0.31
UPF1-211ENST00000600868 IFI44LQ53G44 452 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 TIGD3Q6B0B8 471 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 CBLN3Q6UW01 205 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 ENPP6Q6UWR7 440 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 FKBP9P1Q75LS8 142 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 ZNF550Q7Z398 422 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 GALNTL5Q7Z4T8 443 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 PLCZ1Q86YW0 608 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 FAM86B1Q8N7N1 296 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 FADS6Q8N9I5 356 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 OR2M7Q8NG81 312 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 OR1J4Q8NGS1 313 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 B4GALNT2Q8NHY0 566 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 GEMIN6Q8WXD5 167 aaKnown RBP13.09□□□□□ -0.31
UPF1-211ENST00000600868 ZNF597Q96LX8 424 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 UGT2B28Q9BY64 529 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 DENND2DQ9H6A0 471 aaPredicted RBP13.09□□□□□ -0.31
UPF1-211ENST00000600868 MAGIXQ9H6Y5 334 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 PRDM4Q9UKN5 801 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 CARD8Q9Y2G2 431 aa13.09□□□□□ -0.31
UPF1-211ENST00000600868 NINQ8N4C6 2090 aa13.08□□□□□ -0.32
UPF1-211ENST00000600868 C17orf51A8MQB3 221 aa13.08□□□□□ -0.32
UPF1-211ENST00000600868 ERVH48-1M5A8F1 160 aa13.08□□□□□ -0.32
UPF1-211ENST00000600868 CYP7B1O75881 506 aa13.08□□□□□ -0.32
UPF1-211ENST00000600868 SEMG1P04279 462 aa13.08□□□□□ -0.32
UPF1-211ENST00000600868 GPIP06744 558 aa13.08□□□□□ -0.32
UPF1-211ENST00000600868 SFTPCP11686 197 aa13.08□□□□□ -0.32
UPF1-211ENST00000600868 HOXB6P17509 224 aaKnown RBP13.08□□□□□ -0.32
UPF1-211ENST00000600868 ACAA2P42765 397 aaKnown RBP13.08□□□□□ -0.32
UPF1-211ENST00000600868 ZNF136P52737 540 aa13.08□□□□□ -0.32
UPF1-211ENST00000600868 KCNC4Q03721 635 aa13.08□□□□□ -0.32
UPF1-211ENST00000600868 FOXO1Q12778 655 aa13.08□□□□□ -0.32
UPF1-211ENST00000600868 KPNB1Q14974 876 aaKnown RBP13.08□□□□□ -0.32
UPF1-211ENST00000600868 INPP5JQ15735 1006 aaPredicted RBP13.08□□□□□ -0.32
UPF1-211ENST00000600868 NDUFAF6Q330K2 333 aa13.08□□□□□ -0.32
UPF1-211ENST00000600868 OR5M10Q6IEU7 315 aa13.08□□□□□ -0.32
UPF1-211ENST00000600868 CARM1Q86X55 608 aa13.08□□□□□ -0.32
UPF1-211ENST00000600868 ADGRG5Q8IZF4 528 aa13.08□□□□□ -0.32
UPF1-211ENST00000600868 OR5W2Q8NH69 310 aa13.08□□□□□ -0.32
UPF1-211ENST00000600868 ARSGQ96EG1 525 aa13.08□□□□□ -0.32
UPF1-211ENST00000600868 SH3YL1Q96HL8 342 aaPredicted RBP13.08□□□□□ -0.32
UPF1-211ENST00000600868 WFDC6Q9BQY6 131 aa13.08□□□□□ -0.32
UPF1-211ENST00000600868 ZFP64Q9NPA5 681 aa13.08□□□□□ -0.32
UPF1-211ENST00000600868 TUBA8Q9NY65 449 aaPredicted RBP13.08□□□□□ -0.32
UPF1-211ENST00000600868 MED11Q9P086 117 aa13.08□□□□□ -0.32
UPF1-211ENST00000600868 ICAM5Q9UMF0 924 aa13.08□□□□□ -0.32
UPF1-211ENST00000600868 BOKQ9UMX3 212 aaPredicted RBP13.08□□□□□ -0.32
UPF1-211ENST00000600868 B3GNT3Q9Y2A9 372 aa13.08□□□□□ -0.32
UPF1-211ENST00000600868 SH3GLB1Q9Y371 365 aa13.08□□□□□ -0.32
UPF1-211ENST00000600868 PKD1L2Q7Z442 2459 aa13.07□□□□□ -0.32
UPF1-211ENST00000600868 DHRS12A0PJE2 317 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms