RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 HHLA2Q9UM44 414 aa19.22■□□□□ 0.67
UPF1-207ENST00000599848 FBXO7Q9Y3I1 522 aa19.22■□□□□ 0.67
UPF1-207ENST00000599848 TP53P04637 393 aaPredicted RBP19.22■□□□□ 0.67
UPF1-207ENST00000599848 CHRM4P08173 479 aa19.22■□□□□ 0.67
UPF1-207ENST00000599848 ARSDP51689 593 aa19.22■□□□□ 0.67
UPF1-207ENST00000599848 MBTPS1Q14703 1052 aa19.22■□□□□ 0.67
UPF1-207ENST00000599848 TMEM52BQ4KMG9 183 aa19.22■□□□□ 0.67
UPF1-207ENST00000599848 ANKRD33Q7Z3H0 272 aa19.22■□□□□ 0.67
UPF1-207ENST00000599848 UBL7Q96S82 380 aaPredicted RBP19.22■□□□□ 0.67
UPF1-207ENST00000599848 SLC6A20Q9NP91 592 aa19.22■□□□□ 0.67
UPF1-207ENST00000599848 INMT-MINDY4F8WBC2 141 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 PPP1R3DO95685 299 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 RPS26P62854 115 aaKnown RBP19.21■□□□□ 0.67
UPF1-207ENST00000599848 LMO3Q8TAP4 145 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 CD200R1Q8TD46 325 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 SLC25A43Q8WUT9 341 aaPredicted RBP19.21■□□□□ 0.67
UPF1-207ENST00000599848 CNOT9Q92600 299 aaKnown RBP19.21■□□□□ 0.67
UPF1-207ENST00000599848 TAMM41Q96BW9 452 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 PHRF1Q9P1Y6 1649 aaKnown RBP19.21■□□□□ 0.67
UPF1-207ENST00000599848 MRPS14O60783 128 aaKnown RBP19.21■□□□□ 0.67
UPF1-207ENST00000599848 ETFAP13804 333 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 KCTD20Q7Z5Y7 419 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 NOXA1Q86UR1 476 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 KLBQ86Z14 1044 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 ZNF687Q8N1G0 1237 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 OR51D1Q8NGF3 324 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 GOT1L1Q8NHS2 421 aaPredicted RBP19.21■□□□□ 0.67
UPF1-207ENST00000599848 CORINQ9Y5Q5 1042 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 CCR5P51681 352 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 MPEG1Q2M385 716 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 WDTC1Q8N5D0 677 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 NTMT1Q9BV86 223 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 FIGNL2A6NMB9 653 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 FOXO6A8MYZ6 492 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 H0YGG7 62 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 EGFP01133 1207 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 LAMP1P11279 417 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 UGT2B7P16662 529 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 DCTP40126 519 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 TSFMP43897 325 aaKnown RBP19.21■□□□□ 0.67
UPF1-207ENST00000599848 GABRA2P47869 451 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 PAPD4Q6PIY7 484 aaKnown RBP19.21■□□□□ 0.67
UPF1-207ENST00000599848 PRRC1Q96M27 445 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 ZNF583Q96ND8 569 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 TSPAN10Q9H1Z9 355 aaPredicted RBP19.21■□□□□ 0.67
UPF1-207ENST00000599848 NIPAL2Q9H841 368 aa19.21■□□□□ 0.67
UPF1-207ENST00000599848 ZNF264O43296 627 aa19.21■□□□□ 0.66
UPF1-207ENST00000599848 TAS2R20P59543 309 aa19.21■□□□□ 0.66
UPF1-207ENST00000599848 OR4D1Q15615 310 aa19.21■□□□□ 0.66
UPF1-207ENST00000599848 MEP1AQ16819 746 aa19.21■□□□□ 0.66
UPF1-207ENST00000599848 ZNF321PQ8N8H1 164 aa19.21■□□□□ 0.66
UPF1-207ENST00000599848 B4GAT1O43505 415 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 MAOBP27338 520 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 HOXD13P35453 343 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 GABARAPL2P60520 117 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 ZNF684Q5T5D7 378 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 PLBD1Q6P4A8 553 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 OR1S1Q8NH92 325 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 CD300LFQ8TDQ1 290 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 ZNF431Q8TF32 576 aaPredicted RBP19.2■□□□□ 0.66
UPF1-207ENST00000599848 PSMF1Q92530 271 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 SLC2A5P22732 501 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 SFT2D3Q587I9 215 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 USP3Q9Y6I4 520 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 LTN1O94822 1766 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 A0A1B0GX78 115 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 HIDE1A8MVS5 230 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 C1orf105O95561 183 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 RETP07949 1114 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 PRKACGP22612 351 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 SOX3P41225 446 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 SLC1A3P43003 542 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 ERVFC1P60507 584 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 PHTF2Q8N3S3 785 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 SPEM1Q8N4L4 309 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 PKP2Q99959 881 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 MTG2Q9H4K7 406 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 FKRPQ9H9S5 495 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 PRDM9Q9NQV7 894 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 UCKL1Q9NWZ5 548 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 OR6C65A6NJZ3 312 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 RASAL1O95294 804 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 MAS1P04201 325 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 DPP4P27487 766 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 HOXD9P28356 352 aaPredicted RBP19.2■□□□□ 0.66
UPF1-207ENST00000599848 PTERQ96BW5 349 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 PCED1AQ9H1Q7 454 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 NME7Q9Y5B8 376 aa19.2■□□□□ 0.66
UPF1-207ENST00000599848 KCNAB2Q13303 367 aa19.19■□□□□ 0.66
UPF1-207ENST00000599848 SHISA6Q6ZSJ9 500 aa19.19■□□□□ 0.66
UPF1-207ENST00000599848 LHFPL3Q86UP9 236 aa19.19■□□□□ 0.66
UPF1-207ENST00000599848 SMAD6O43541 496 aaKnown RBP19.19■□□□□ 0.66
UPF1-207ENST00000599848 LILRB5O75023 590 aa19.19■□□□□ 0.66
UPF1-207ENST00000599848 PAHP00439 452 aa19.19■□□□□ 0.66
UPF1-207ENST00000599848 GGT1P19440 569 aa19.19■□□□□ 0.66
UPF1-207ENST00000599848 THBS3P49746 956 aa19.19■□□□□ 0.66
UPF1-207ENST00000599848 AKR1C8PQ5T2L2 129 aa19.19■□□□□ 0.66
UPF1-207ENST00000599848 OR4K3Q96R72 315 aa19.19■□□□□ 0.66
UPF1-207ENST00000599848 KLHL9Q9P2J3 617 aa19.19■□□□□ 0.66
UPF1-207ENST00000599848 CBX7O95931 251 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms