RNA–Protein interactions for RNA: ENST00000598558.5

SHKBP1-217, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 579 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-217ENST00000598558 SEM1Q6ZVN7 128 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 MTERF4Q7Z6M4 381 aaKnown RBP12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 VRK2Q86Y07 508 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 PTOV1Q86YD1 416 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 ZNF527Q8NB42 609 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 GPR119Q8TDV5 335 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 CNOT9Q92600 299 aaKnown RBP12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 SARAFQ96BY9 339 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 MTHFD2LQ9H903 347 aaPredicted RBP12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 NANOGQ9H9S0 305 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 A4GALTQ9NPC4 353 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 MED17Q9NVC6 651 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 ALKBH4Q9NXW9 302 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 VDAC3Q9Y277 283 aa12.86□□□□□ -0.35
SHKBP1-217ENST00000598558 ESPL1Q14674 2120 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 GTPBP1O00178 669 aaKnown RBP12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 MRASO14807 208 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 BCKDKO14874 412 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 CCDC22O60826 627 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 DNAJA2O60884 412 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 GCM2O75603 506 aaPredicted RBP12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 LINGO3P0C6S8 592 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 ARAFP10398 606 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 COX4I1P13073 169 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 ANXA11P50995 505 aaKnown RBP12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 P2RX1P51575 399 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 FADDQ13158 208 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 CYLC2Q14093 348 aaPredicted RBP12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 ZNF630Q2M218 657 aaPredicted RBP12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 PLPPR5Q32ZL2 321 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 RABL3Q5HYI8 236 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 IFNEQ86WN2 208 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 MISPQ8IVT2 679 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 ULK2Q8IYT8 1036 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 FAM71CQ8NEG0 241 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 NFKBIDQ8NI38 313 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 RCN3Q96D15 328 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 SFXN2Q96NB2 322 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 CCT8L2Q96SF2 557 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 TREX2Q9BQ50 279 aaPredicted RBP12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 PRDM14Q9GZV8 571 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 LAT2Q9GZY6 243 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 KAT8Q9H7Z6 458 aaKnown RBP12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 PTGES2Q9H7Z7 377 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 GMPR2Q9P2T1 348 aaKnown RBP12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 P2RX2Q9UBL9 471 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 ADAM21Q9UKJ8 722 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 USP22Q9UPT9 525 aa12.85□□□□□ -0.35
SHKBP1-217ENST00000598558 ZNF407Q9C0G0 2248 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 E9PLN8 166 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 SLC22A2O15244 555 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 ZNF264O43296 627 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 EIF4E2O60573 245 aaKnown RBP12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 CYP7B1O75881 506 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 PGM3O95394 542 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 ACTL6AO96019 429 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 CSTAP01040 98 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 OPN1LWP04000 364 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 UBTFL6P0CB48 400 aaPredicted RBP12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 UBL4AP11441 157 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 CHMP24386 653 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 SUCLG1P53597 346 aaKnown RBP12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 CLDN18P56856 261 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 CLDN20P56880 219 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 KCNJ10P78508 379 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 SRYQ05066 204 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 TRMT5Q32P41 509 aaKnown RBP12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 GLYR1Q49A26 553 aaPredicted RBP12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 COQ5Q5HYK3 327 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 GCNT6Q5T4J0 391 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 WLSQ5T9L3 541 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 RAET1LQ5VY80 246 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 COMTD1Q86VU5 262 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 CLIP4Q8N3C7 705 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 LRRC58Q96CX6 371 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 VKORC1Q9BQB6 163 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 THUMPD3Q9BV44 507 aaKnown RBP12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 NSRP1Q9H0G5 558 aaKnown RBP12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 RAD21L1Q9H4I0 556 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 BCL2L10Q9HD36 194 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 RLIMQ9NVW2 624 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 SUCOQ9UBS9 1254 aaKnown RBP12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 CAMK2AQ9UQM7 478 aa12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 USP9XQ93008 2570 aaPredicted RBP12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 RP1L1Q8IWN7 2480 aaPredicted RBP12.84□□□□□ -0.35
SHKBP1-217ENST00000598558 ZGRF1Q86YA3 2104 aa12.83□□□□□ -0.35
SHKBP1-217ENST00000598558 A0A0G2JPF8 293 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 EVPLLA8MZ36 301 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 HNRNPCL2B2RXH8 293 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 HNRNPCL3B7ZW38 293 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 H3BNH8 94 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 HNRNPCL1O60812 293 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 SHOX2O60902 331 aaPredicted RBP12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 TOXO94900 526 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 NTN1O95631 604 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 EPPINO95925 133 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 HNRNPCL4P0DMR1 293 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 GLI4P10075 376 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 CPN1P15169 458 aa12.83□□□□□ -0.36
SHKBP1-217ENST00000598558 ZNF708P17019 499 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 72.3 ms