RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 PLPPR2Q96GM1 343 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 ACTR6Q9GZN1 396 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 C20orf27Q9GZN8 174 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 EML4Q9HC35 981 aaKnown RBP11.19□□□□□ -0.62
TRIM28-212ENST00000597995 SH3BP4Q9P0V3 963 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 ATP6V1HQ9UI12 483 aa11.19□□□□□ -0.62
TRIM28-212ENST00000597995 PRR14LQ5THK1 2151 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 CHD3Q12873 2000 aaKnown RBP11.18□□□□□ -0.62
TRIM28-212ENST00000597995 WDR91A4D1P6 747 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 C7orf72A4D263 438 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 ALG1L2C9J202 215 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 SKAP2O75563 359 aaPredicted RBP11.18□□□□□ -0.62
TRIM28-212ENST00000597995 SYNGR4O95473 234 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 NGFRP08138 427 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 DHRS4L1P0CG22 281 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 ACP2P11117 423 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 LAMP1P11279 417 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 GABRA3P34903 492 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 MANFP55145 182 aaKnown RBP11.18□□□□□ -0.62
TRIM28-212ENST00000597995 RPS4XP62701 263 aaKnown RBP11.18□□□□□ -0.62
TRIM28-212ENST00000597995 RAC1P63000 192 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 KRTAP1-1Q07627 177 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 PTGR1Q14914 329 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 CTU2Q2VPK5 515 aaKnown RBP11.18□□□□□ -0.62
TRIM28-212ENST00000597995 GRAMD1BQ3KR37 738 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 HEPHL1Q6MZM0 1159 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 ESPNLQ6ZVH7 1005 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 WFDC8Q8IUA0 241 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 GTPBP8Q8N3Z3 284 aaPredicted RBP11.18□□□□□ -0.62
TRIM28-212ENST00000597995 OR7A2PQ8NGA2 310 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 ZBED6CLQ96FA7 236 aaPredicted RBP11.18□□□□□ -0.62
TRIM28-212ENST00000597995 C16orf58Q96GQ5 468 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 ADGRG7Q96K78 797 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 PPP3R2Q96LZ3 170 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 ZIM3Q96PE6 472 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 C1orf50Q9BV19 199 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 HDHD5Q9BXW7 423 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 EQTNQ9NQ60 294 aa11.18□□□□□ -0.62
TRIM28-212ENST00000597995 ACSS1Q9NUB1 689 aaPredicted RBP11.18□□□□□ -0.62
TRIM28-212ENST00000597995 SONP18583 2426 aaKnown RBP11.17□□□□□ -0.62
TRIM28-212ENST00000597995 NUP214P35658 2090 aaPredicted RBP11.17□□□□□ -0.62
TRIM28-212ENST00000597995 SHISA8B8ZZ34 492 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 OVOL3O00110 214 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 SCAMP2O15127 329 aaKnown RBP11.17□□□□□ -0.62
TRIM28-212ENST00000597995 RGS16O15492 202 aaPredicted RBP11.17□□□□□ -0.62
TRIM28-212ENST00000597995 NDUFB5O43674 189 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 NKX2-2O95096 273 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 PRPS2P11908 318 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 PSMA4P25789 261 aaKnown RBP11.17□□□□□ -0.62
TRIM28-212ENST00000597995 GPC1P35052 558 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 ASMTP46597 345 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 RFX3P48380 749 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 PRKAG1P54619 331 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 CLEC12BQ2HXU8 276 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 PDSS1Q5T2R2 415 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 CPTPQ5TA50 214 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 IL23RQ5VWK5 629 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 PPP4R4Q6NUP7 873 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 ZAR1Q86SH2 424 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 GALNT10Q86SR1 603 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 NUDCD3Q8IVD9 361 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 KRTCAP2Q8N6L1 136 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 SLC16A11Q8NCK7 471 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 NUP43Q8NFH3 380 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 STEAP2Q8NFT2 490 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 FBXO30Q8TB52 745 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 FAM110BQ8TC76 370 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 ACTRT2Q8TDY3 377 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 AKAP1Q92667 903 aaKnown RBP eCLIP11.17□□□□□ -0.62
TRIM28-212ENST00000597995 ZBTB8AQ96BR9 441 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 MTERF3Q96E29 417 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 TRMT61AQ96FX7 289 aaKnown RBP11.17□□□□□ -0.62
TRIM28-212ENST00000597995 REPIN1Q9BWE0 567 aaKnown RBP11.17□□□□□ -0.62
TRIM28-212ENST00000597995 SSU72Q9NP77 194 aaKnown RBP11.17□□□□□ -0.62
TRIM28-212ENST00000597995 FBXO34Q9NWN3 711 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 CLEC4AQ9UMR7 237 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 VDAC3Q9Y277 283 aa11.17□□□□□ -0.62
TRIM28-212ENST00000597995 ABCA1O95477 2261 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 A0A1W2PRB8 838 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 CXCL13O43927 109 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 GMFGO60234 142 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 SERPINE1P05121 402 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 TUBBP07437 444 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 PABPC4LP0CB38 370 aaKnown RBP11.16□□□□□ -0.62
TRIM28-212ENST00000597995 LCN1P31025 176 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 IDUAP35475 653 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 DMTNQ08495 405 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 MLC1Q15049 377 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 CHI3L2Q15782 390 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 DUSP5Q16690 384 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 VPS26BQ4G0F5 336 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 CEP85LQ5SZL2 805 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 MFSD12Q6NUT3 480 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 DNAJC14Q6Y2X3 702 aaPredicted RBP11.16□□□□□ -0.62
TRIM28-212ENST00000597995 R3HCC1LQ7Z5L2 792 aaKnown RBP11.16□□□□□ -0.62
TRIM28-212ENST00000597995 MISPQ8IVT2 679 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 RIMKLAQ8IXN7 391 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 ZNF781Q8N8C0 355 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 CDRT4Q8N9R6 151 aa11.16□□□□□ -0.62
TRIM28-212ENST00000597995 OR4C3Q8NH37 302 aa11.16□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms