RNA–Protein interactions for RNA: ENST00000582092.1

SS18-220, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 215 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-220ENST00000582092 NPTX1Q15818 432 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 NNATQ16517 81 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 CTU2Q2VPK5 515 aaKnown RBP8.58□□□□□ -1.04
SS18-220ENST00000582092 PDZK1Q5T2W1 519 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 GDF7Q7Z4P5 450 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 RNF113BQ8IZP6 322 aaKnown RBP8.58□□□□□ -1.04
SS18-220ENST00000582092 TMCO5AQ8N6Q1 288 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 BCORP1Q8N888 145 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 PLPP5Q8NEB5 264 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 OR52L1Q8NGH7 329 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 STT3BQ8TCJ2 826 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 SLC7A13Q8TCU3 470 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 SLC2A12Q8TD20 617 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 TRUB1Q8WWH5 349 aaKnown RBP8.58□□□□□ -1.04
SS18-220ENST00000582092 OIT3Q8WWZ8 545 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 RORBQ92753 470 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 OSTF1Q92882 214 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 TSLPQ969D9 159 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 ZNF566Q969W8 418 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 LCORQ96JN0 433 aaPredicted RBP8.58□□□□□ -1.04
SS18-220ENST00000582092 VSTM2LQ96N03 204 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 MYCBPQ99417 103 aaPredicted RBP8.58□□□□□ -1.04
SS18-220ENST00000582092 ITPAQ9BY32 194 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 VN1R1Q9GZP7 353 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 UBQLN4Q9NRR5 601 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 FBXO34Q9NWN3 711 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 H2AFY2Q9P0M6 372 aaPredicted RBP8.58□□□□□ -1.04
SS18-220ENST00000582092 RSL24D1Q9UHA3 163 aaKnown RBP8.58□□□□□ -1.04
SS18-220ENST00000582092 SLC35A3Q9Y2D2 325 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 GPR55Q9Y2T6 319 aaPredicted RBP8.58□□□□□ -1.04
SS18-220ENST00000582092 MED31Q9Y3C7 131 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 PCDHGA6Q9Y5G7 932 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 PCDHGA10Q9Y5H3 936 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 NINQ8N4C6 2090 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 AKAP13Q12802 2813 aa8.58□□□□□ -1.04
SS18-220ENST00000582092 TCRBV16S1A1N1A0A5B0 115 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 SH3D21A4FU49 640 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 CDHR4A6H8M9 788 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 EFCAB10A6NFE3 127 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 FRG2CA6NGY1 282 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 SERINC4A6NH21 518 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 TGFBR3LH3BV60 316 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 HRKO00198 91 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 CPNE3O75131 537 aaKnown RBP8.57□□□□□ -1.04
SS18-220ENST00000582092 CNOT3O75175 753 aaKnown RBP8.57□□□□□ -1.04
SS18-220ENST00000582092 SOX14O95416 240 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 IL33O95760 270 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 RECKO95980 971 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 BMP7P18075 431 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 RPS4Y1P22090 263 aaKnown RBP8.57□□□□□ -1.04
SS18-220ENST00000582092 MMP11P24347 488 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 CD82P27701 267 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 LCN1P31025 176 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 MAP3K8P41279 467 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 ALDH3B2P48448 385 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 SLC37A1P57057 533 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 RHAGQ02094 409 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 TEKQ02763 1124 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 MVKQ03426 396 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 ZFP36L1Q07352 338 aaKnown RBP8.57□□□□□ -1.04
SS18-220ENST00000582092 TSPAN31Q12999 210 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 GINS1Q14691 196 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 ZNF141Q15928 474 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 SNAPC1Q16533 368 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 MAPK14Q16539 360 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 COL28A1Q2UY09 1125 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 EXOSC6Q5RKV6 272 aaKnown RBP8.57□□□□□ -1.04
SS18-220ENST00000582092 TMEM236Q5W0B7 351 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 C1orf94Q6P1W5 598 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 ZNF613Q6PF04 617 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 BORAQ6PGQ7 559 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 C19orf48Q6RUI8 117 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 CD300LDQ6UXZ3 194 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 B3GNT6Q6ZMB0 384 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 CCDC81Q6ZN84 652 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 MBOAT2Q6ZWT7 520 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 OVCH1Q7RTY7 1134 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 B3GNT8Q7Z7M8 397 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 CLVS1Q8IUQ0 354 aaPredicted RBP8.57□□□□□ -1.04
SS18-220ENST00000582092 ENTHD1Q8IYW4 607 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 CADM2Q8N3J6 435 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 ZNF615Q8N8J6 731 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 OR4N2Q8NGD1 307 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 RHOXF1Q8NHV9 184 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 PTPMT1Q8WUK0 201 aaPredicted RBP8.57□□□□□ -1.04
SS18-220ENST00000582092 HOXB13Q92826 284 aaPredicted RBP8.57□□□□□ -1.04
SS18-220ENST00000582092 SLC35B4Q969S0 331 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 NMD3Q96D46 503 aaKnown RBP8.57□□□□□ -1.04
SS18-220ENST00000582092 HSPBAP1Q96EW2 488 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 COPS4Q9BT78 406 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 PRR14Q9BWN1 585 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 B3GNT4Q9C0J1 378 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 TGIF2Q9GZN2 237 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 TBC1D23Q9NUY8 699 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 TVP23BQ9NYZ1 205 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 PISDQ9UG56 409 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 LOXL2Q9Y4K0 774 aa8.57□□□□□ -1.04
SS18-220ENST00000582092 KMT2BQ9UMN6 2715 aaPredicted RBP8.57□□□□□ -1.04
SS18-220ENST00000582092 A0A087WUU8 490 aa8.56□□□□□ -1.04
SS18-220ENST00000582092 IGKV3D-11A0A0A0MRZ8 115 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms