RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 OR2M5A3KFT3 312 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 C17orf51A8MQB3 221 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 EEF1E1-BLOC1S5C9J1V9 151 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 GTPBP1O00178 669 aaKnown RBP7.32□□□□□ -1.24
VPS53-214ENST00000572607 SDHDO14521 159 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 KLF11O14901 512 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 EEF1E1O43324 174 aaKnown RBP7.32□□□□□ -1.24
VPS53-214ENST00000572607 HCRTR2O43614 444 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 NUDT14O95848 222 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 IDO1P14902 403 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 ZNF17P17021 662 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 ME2P23368 584 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 CEACAM8P31997 349 aaPredicted RBP7.32□□□□□ -1.24
VPS53-214ENST00000572607 CHI3L1P36222 383 aaPredicted RBP7.32□□□□□ -1.24
VPS53-214ENST00000572607 KHKP50053 298 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 CLDN18P56856 261 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 OCRLQ01968 901 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 TLE4Q04727 773 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 TFF3Q07654 80 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 MYBPHQ13203 477 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 TESK1Q15569 626 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 SGCBQ16585 318 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 GSTA3Q16772 222 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 SPANXN4Q5MJ08 99 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 EXOSC6Q5RKV6 272 aaKnown RBP7.32□□□□□ -1.24
VPS53-214ENST00000572607 PPP4R4Q6NUP7 873 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 MTERF4Q7Z6M4 381 aaKnown RBP7.32□□□□□ -1.24
VPS53-214ENST00000572607 LIX1LQ8IVB5 337 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 ZNF295-AS1Q8N0V1 137 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 C9orf106Q8NAJ2 232 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 OR5M1Q8NGP8 315 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 OR4C3Q8NH37 302 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 PHOSPHO1Q8TCT1 267 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 ACTRT2Q8TDY3 377 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 NUDT8Q8WV74 236 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 SMPDL3BQ92485 455 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 RNASE6Q93091 150 aaKnown RBP7.32□□□□□ -1.24
VPS53-214ENST00000572607 ARL8AQ96BM9 186 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 C14orf79Q96F83 325 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 SH3YL1Q96HL8 342 aaPredicted RBP7.32□□□□□ -1.24
VPS53-214ENST00000572607 PANX1Q96RD7 426 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 SFXN3Q9BWM7 321 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 PRRG4Q9BZD6 226 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 TRIM8Q9BZR9 551 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 WDR55Q9H6Y2 383 aaPredicted RBP7.32□□□□□ -1.24
VPS53-214ENST00000572607 KCNN3Q9UGI6 736 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 AP4B1Q9Y6B7 739 aa7.32□□□□□ -1.24
VPS53-214ENST00000572607 SLC22A20A6NK97 555 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 HMGB1P1B2RPK0 211 aaPredicted RBP7.31□□□□□ -1.24
VPS53-214ENST00000572607 SYT5O00445 386 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 EIF1AYO14602 144 aaKnown RBP7.31□□□□□ -1.24
VPS53-214ENST00000572607 POLR3GO15318 223 aaPredicted RBP7.31□□□□□ -1.24
VPS53-214ENST00000572607 DIAPH2O60879 1101 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 STX11O75558 287 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 SLC22A3O75751 556 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 RCBTB2O95199 551 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 IL18BPO95998 194 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 PGRP06401 933 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 CRHP06850 196 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 FCGR2AP12318 317 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 IGFBP2P18065 325 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 EIF1P41567 113 aaKnown RBP7.31□□□□□ -1.24
VPS53-214ENST00000572607 KIR2DL3P43628 341 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 CPA2P48052 419 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 CCR4P51679 360 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 AGFG1P52594 562 aaKnown RBP7.31□□□□□ -1.24
VPS53-214ENST00000572607 ZNF136P52737 540 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 ATP12AP54707 1039 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 SUMO3P55854 103 aaPredicted RBP7.31□□□□□ -1.24
VPS53-214ENST00000572607 B3GALT5-AS1P59052 145 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 STX1BP61266 288 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 UFM1P61960 85 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 RPS26P62854 115 aaKnown RBP7.31□□□□□ -1.24
VPS53-214ENST00000572607 TXNL4AP83876 142 aaKnown RBP7.31□□□□□ -1.24
VPS53-214ENST00000572607 GPR68Q15743 365 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 PDCD4Q53EL6 469 aaKnown RBP7.31□□□□□ -1.24
VPS53-214ENST00000572607 ARSJQ5FYB0 599 aaPredicted RBP7.31□□□□□ -1.24
VPS53-214ENST00000572607 PDSS1Q5T2R2 415 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 ARSKQ6UWY0 536 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 APOOLQ6UXV4 268 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 ZAR1Q86SH2 424 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 TMEM200AQ86VY9 491 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 KIF18BQ86Y91 864 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 DMRTC2Q8IXT2 367 aaPredicted RBP7.31□□□□□ -1.24
VPS53-214ENST00000572607 CLEC4FQ8N1N0 589 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 TMCO5AQ8N6Q1 288 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 RELL2Q8NC24 303 aaPredicted RBP7.31□□□□□ -1.24
VPS53-214ENST00000572607 NAXEQ8NCW5 288 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 TOR1AIP2Q8NFQ8 470 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 OR5D16Q8NGK9 328 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 ZNF75CPQ92670 426 aaPredicted RBP7.31□□□□□ -1.24
VPS53-214ENST00000572607 INTS12Q96CB8 462 aaKnown RBP7.31□□□□□ -1.24
VPS53-214ENST00000572607 OR52E6Q96RD3 313 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 UCN2Q96RP3 112 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 TREX2Q9BQ50 279 aaPredicted RBP7.31□□□□□ -1.24
VPS53-214ENST00000572607 SLC35A5Q9BS91 424 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 RTN4RQ9BZR6 473 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 OR51I1Q9H343 314 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 PIGMQ9H3S5 423 aa7.31□□□□□ -1.24
VPS53-214ENST00000572607 RMND5AQ9H871 391 aa7.31□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms