RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 TGFBR3LH3BV60 316 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 M0R3H8 397 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 FFAR1O14842 300 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 CHP2O43745 196 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 CBFA2T3O75081 653 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 PPM1BO75688 479 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 CSTAP01040 98 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 JMJD7P0C870 316 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 PNMTP11086 282 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 TNFRSF1BP20333 461 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 FPR3P25089 353 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 CD82P27701 267 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 PTGER1P34995 402 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 GGT2P36268 569 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 YAP1P46937 504 aaKnown RBP7.35□□□□□ -1.23
VPS39-213ENST00000570062 MAP2K6P52564 334 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 SMSP52788 366 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 CRISP1P54107 249 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 ISL1P61371 349 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 MYBPC1Q00872 1141 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 IL5RAQ01344 420 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 TSPAN31Q12999 210 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 TARDBPQ13148 414 aaKnown RBP eCLIP7.35□□□□□ -1.23
VPS39-213ENST00000570062 GANABQ14697 944 aaKnown RBP7.35□□□□□ -1.23
VPS39-213ENST00000570062 EBPQ15125 230 aaKnown RBP7.35□□□□□ -1.23
VPS39-213ENST00000570062 ISXQ2M1V0 245 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 ANKDD1AQ495B1 522 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 KLHL26Q53HC5 615 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 C6orf141Q5SZD1 244 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 MRPL2Q5T653 305 aaKnown RBP7.35□□□□□ -1.23
VPS39-213ENST00000570062 CDCP2Q5VXM1 449 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 MEDAGQ5VYS4 303 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 PODNL1Q6PEZ8 512 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 C6orf15Q6UXA7 325 aaPredicted RBP7.35□□□□□ -1.23
VPS39-213ENST00000570062 CASP12Q6UXS9 341 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 LINC00114Q6XXX2 140 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 ZNF517Q6ZMY9 492 aaPredicted RBP7.35□□□□□ -1.23
VPS39-213ENST00000570062 ZNF836Q6ZNA1 936 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 MBOAT2Q6ZWT7 520 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 RAB11FIP2Q7L804 512 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 NUP54Q7Z3B4 507 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 OR4K5Q8NGD3 323 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 OR2I1PQ8NGU4 316 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 SLC22A8Q8TCC7 542 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 SLC7A13Q8TCU3 470 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 FBLIM1Q8WUP2 373 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 ZDHHC19Q8WVZ1 309 aaPredicted RBP7.35□□□□□ -1.23
VPS39-213ENST00000570062 TTC9Q92623 222 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 MR1Q95460 341 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 ADIPOR1Q96A54 375 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 DTNBP1Q96EV8 351 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 MBOAT4Q96T53 435 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 TUBA1CQ9BQE3 449 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 FUZQ9BT04 418 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 GPR87Q9BY21 358 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 ULBP3Q9BZM4 244 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 WWTR1Q9GZV5 400 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 SDHAF3Q9NRP4 125 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 SLC22A11Q9NSA0 550 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 PLCXD1Q9NUJ7 323 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 VNN3Q9NY84 501 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 LOXL2Q9Y4K0 774 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 MAGED1Q9Y5V3 778 aaPredicted RBP7.35□□□□□ -1.23
VPS39-213ENST00000570062 SNX5Q9Y5X3 404 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 CACNA1IQ9P0X4 2223 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 CEP192Q8TEP8 1941 aa7.35□□□□□ -1.23
VPS39-213ENST00000570062 EML5Q05BV3 1969 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 A0A1W2PQ72 361 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 C21orf140B9A014 251 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 E9PQ18 207 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 J3KTA2 159 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 GTPBP1O00178 669 aaKnown RBP7.34□□□□□ -1.23
VPS39-213ENST00000570062 ZNF264O43296 627 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 REM1O75628 298 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 RCBTB2O95199 551 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 MT-CO3P00414 261 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 GASTP01350 101 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 CLPSP04118 112 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 HMGN1P05114 100 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 UBL4AP11441 157 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 BMP7P18075 431 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 FKBP2P26885 142 aaKnown RBP7.34□□□□□ -1.23
VPS39-213ENST00000570062 FOLR3P41439 243 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 ID4P47928 161 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 SLC26A5P58743 744 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 RPS15P62841 145 aaKnown RBP7.34□□□□□ -1.23
VPS39-213ENST00000570062 RNF4P78317 190 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 MVKQ03426 396 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 PLCXD2Q0VAA5 305 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 CDK5R2Q13319 367 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 NCF4Q15080 339 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 OR1Q1Q15612 314 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 PDZK1Q5T2W1 519 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 CCNJQ5T5M9 372 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 BROXQ5VW32 411 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 PGBD2Q6P3X8 592 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 PAPD4Q6PIY7 484 aaKnown RBP7.34□□□□□ -1.23
VPS39-213ENST00000570062 C5orf46Q6UWT4 87 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 PRR23CQ6ZRP0 262 aa7.34□□□□□ -1.23
VPS39-213ENST00000570062 RASSF6Q6ZTQ3 369 aa7.34□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms