RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 WDYHV1Q96HA8 205 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 TTYH2Q9BSA4 534 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 PAIP1Q9H074 479 aaKnown RBP11.77□□□□□ -0.53
CLK3-224ENST00000568605 ZNF385DQ9H6B1 395 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 NIPSNAP3AQ9UFN0 247 aaPredicted RBP11.77□□□□□ -0.53
CLK3-224ENST00000568605 NDUFAF1Q9Y375 327 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 FAM215AQ9Y5M1 114 aa11.77□□□□□ -0.53
CLK3-224ENST00000568605 KLF2Q9Y5W3 355 aaPredicted RBP11.77□□□□□ -0.53
CLK3-224ENST00000568605 UTP20O75691 2785 aaKnown RBP11.76□□□□□ -0.53
CLK3-224ENST00000568605 OR2M5A3KFT3 312 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 SERINC4A6NH21 518 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 EVPLLA8MZ36 301 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 CLIC1O00299 241 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 ZIC3O60481 467 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 UGT2B17O75795 530 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 CSTAP01040 98 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 IL2RAP01589 272 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 ZNF708P17019 499 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 ME2P23368 584 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 ELK4P28324 431 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 RPS3AP61247 264 aaKnown RBP11.76□□□□□ -0.53
CLK3-224ENST00000568605 PMPCAQ10713 525 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 CBFBQ13951 182 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 FGFBP1Q14512 234 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 PLPPR5Q32ZL2 321 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 GTDC1Q4AE62 458 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 COX20Q5RI15 118 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 RIPPLY2Q5TAB7 128 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 DHDDSQ86SQ9 333 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 CMIPQ8IY22 773 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 PEX5LQ8IYB4 626 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 ZPLD1Q8TCW7 415 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 WDR60Q8WVS4 1066 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 AURKBQ96GD4 344 aaPredicted RBP11.76□□□□□ -0.53
CLK3-224ENST00000568605 SAP130Q9H0E3 1048 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 SLC6A13Q9NSD5 602 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 MED17Q9NVC6 651 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 CARD8Q9Y2G2 431 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 L3MBTL1Q9Y468 752 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 PCDHB14Q9Y5E9 798 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 AP4B1Q9Y6B7 739 aa11.76□□□□□ -0.53
CLK3-224ENST00000568605 FLNBO75369 2602 aaKnown RBP11.75□□□□□ -0.53
CLK3-224ENST00000568605 CD8B2A6NJW9 211 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 HSPB2A8KAH6 182 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 BBIP1A8MTZ0 92 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 B4DXG7 233 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 C5orf58C9J3I9 102 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 PRSS44E7EML9 344 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 FCMRO60667 390 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 EPPINO95925 133 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 BCHEP06276 602 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 DBIP07108 87 aaKnown RBP11.75□□□□□ -0.53
CLK3-224ENST00000568605 SNRPB2P08579 225 aaKnown RBP11.75□□□□□ -0.53
CLK3-224ENST00000568605 GLI4P10075 376 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 ETFAP13804 333 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 UQCRBP14927 111 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 ADSLP30566 484 aaPredicted RBP11.75□□□□□ -0.53
CLK3-224ENST00000568605 ADH7P40394 386 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 LHX2P50458 406 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 CLDN18P56856 261 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 B3GALT5-AS1P59052 145 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 SRYQ05066 204 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 RGNQ15493 299 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 HSPB2Q16082 182 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 SYPL1Q16563 259 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 NSUN5P2Q63ZY6 315 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 RTL6Q6ICC9 239 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 CGB2Q6NT52 195 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 ARSKQ6UWY0 536 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 NCCRP1Q6ZVX7 275 aaPredicted RBP11.75□□□□□ -0.53
CLK3-224ENST00000568605 UBQLNLQ8IYU4 475 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 GTPBP8Q8N3Z3 284 aaPredicted RBP11.75□□□□□ -0.53
CLK3-224ENST00000568605 RPRMLQ8N4K4 120 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 MARVELD2Q8N4S9 558 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 ANKFN1Q8N957 763 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 TMEM234Q8WY98 164 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 SMPDL3BQ92485 455 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 ZFP3Q96NJ6 502 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 ZNF317Q96PQ6 595 aaPredicted RBP11.75□□□□□ -0.53
CLK3-224ENST00000568605 TRIB1Q96RU8 372 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 TM9SF2Q99805 663 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 LAT2Q9GZY6 243 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 SLC38A1Q9H2H9 487 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 CALHM2Q9HA72 323 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 CHST11Q9NPF2 352 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 ST6GALNAC1Q9NSC7 600 aaPredicted RBP11.75□□□□□ -0.53
CLK3-224ENST00000568605 ICAM5Q9UMF0 924 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 RNF6Q9Y252 685 aa11.75□□□□□ -0.53
CLK3-224ENST00000568605 GPC6Q9Y625 555 aaPredicted RBP11.75□□□□□ -0.53
CLK3-224ENST00000568605 COL12A1Q99715 3063 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 MBD3L4A6NDZ8 208 aaPredicted RBP11.74□□□□□ -0.53
CLK3-224ENST00000568605 MBD3L3A6NE82 208 aaPredicted RBP11.74□□□□□ -0.53
CLK3-224ENST00000568605 MBD3L5A6NJ08 208 aaPredicted RBP11.74□□□□□ -0.53
CLK3-224ENST00000568605 GJE1A6NN92 205 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 DVL2O14641 736 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 SLC22A2O15244 555 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 SEC14L5O43304 696 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 CYP7B1O75881 506 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 CLDN1O95832 211 aa11.74□□□□□ -0.53
CLK3-224ENST00000568605 CHRM4P08173 479 aa11.74□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms