RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 MTHFD2LQ9H903 347 aaPredicted RBP17.72■□□□□ 0.43
CLN3-225ENST00000566824 VDAC3Q9Y277 283 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 C15orf38-AP3S2A0A0A6YYH1 394 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 GTPBP1O00178 669 aaKnown RBP17.72■□□□□ 0.43
CLN3-225ENST00000566824 ADAM11O75078 769 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 TPOP07202 933 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 UBL4AP11441 157 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 PGM1P36871 562 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 RBPJQ06330 500 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 SKP2Q13309 424 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 GXYLT1Q4G148 440 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 MTERF4Q7Z6M4 381 aaKnown RBP17.72■□□□□ 0.43
CLN3-225ENST00000566824 MISPQ8IVT2 679 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 RPRMLQ8N4K4 120 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 TIMP4Q99727 224 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 ARL8BQ9NVJ2 186 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 ERRFI1Q9UJM3 462 aaPredicted RBP17.72■□□□□ 0.43
CLN3-225ENST00000566824 MRPS18CQ9Y3D5 142 aaKnown RBP17.72■□□□□ 0.43
CLN3-225ENST00000566824 CHST2Q9Y4C5 530 aa17.72■□□□□ 0.43
CLN3-225ENST00000566824 CLEC18AA5D8T8 446 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 KDM4EB2RXH2 506 aaPredicted RBP17.71■□□□□ 0.42
CLN3-225ENST00000566824 ZNF264O43296 627 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 LRRTM2O43300 516 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 GCM2O75603 506 aaPredicted RBP17.71■□□□□ 0.42
CLN3-225ENST00000566824 CYP7B1O75881 506 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 PGM3O95394 542 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 CSTAP01040 98 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 UBTFL6P0CB48 400 aaPredicted RBP17.71■□□□□ 0.42
CLN3-225ENST00000566824 SLC6A2P23975 617 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 CA7P43166 264 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 CPA2P48052 419 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 CRISP3P54108 245 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 CDK6Q00534 326 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 KCNC4Q03721 635 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 ZNF630Q2M218 657 aaPredicted RBP17.71■□□□□ 0.42
CLN3-225ENST00000566824 TMEM44Q2T9K0 475 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 VASNQ6EMK4 673 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 CLEC18BQ6UXF7 455 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 ZZZ3Q8IYH5 903 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 ANKS4BQ8N8V4 417 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 CLEC18CQ8NCF0 446 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 FAM71CQ8NEG0 241 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 OR10A6Q8NH74 314 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 POC1BQ8TC44 478 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 GPR119Q8TDV5 335 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 GPATCH1Q9BRR8 931 aaKnown RBP17.71■□□□□ 0.42
CLN3-225ENST00000566824 TMEM38AQ9H6F2 299 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 MED17Q9NVC6 651 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 RLIMQ9NVW2 624 aa17.71■□□□□ 0.42
CLN3-225ENST00000566824 THUMPD1Q9NXG2 353 aaKnown RBP17.71■□□□□ 0.42
CLN3-225ENST00000566824 SUCOQ9UBS9 1254 aaKnown RBP17.71■□□□□ 0.42
CLN3-225ENST00000566824 A0A0G2JPF8 293 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 OR2M5A3KFT3 312 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 HNRNPCL2B2RXH8 293 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 HNRNPCL3B7ZW38 293 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 H3BNH8 94 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 HNRNPCL1O60812 293 aaKnown RBP17.7■□□□□ 0.42
CLN3-225ENST00000566824 HNRNPCL4P0DMR1 293 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 MSX1P28360 303 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 ADH7P40394 386 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 KCNJ10P78508 379 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 SCARB2Q14108 478 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 PLPPR5Q32ZL2 321 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 NHSL2Q5HYW2 709 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 GKAP1Q5VSY0 366 aaPredicted RBP17.7■□□□□ 0.42
CLN3-225ENST00000566824 C8orf82Q6P1X6 216 aaPredicted RBP17.7■□□□□ 0.42
CLN3-225ENST00000566824 ZNF836Q6ZNA1 936 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 EIF3MQ7L2H7 374 aaKnown RBP17.7■□□□□ 0.42
CLN3-225ENST00000566824 NET1Q7Z628 596 aaPredicted RBP17.7■□□□□ 0.42
CLN3-225ENST00000566824 FJX1Q86VR8 437 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 COMTD1Q86VU5 262 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 IFNEQ86WN2 208 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 CALHM3Q86XJ0 350 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 FITM2Q8N6M3 262 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 PCYOX1LQ8NBM8 494 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 OR52P1PQ8NH57 321 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 FBXO27Q8NI29 283 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 WDR60Q8WVS4 1066 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 ABTB1Q969K4 478 aaPredicted RBP17.7■□□□□ 0.42
CLN3-225ENST00000566824 SFXN2Q96NB2 322 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 LAT2Q9GZY6 243 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 PTGES2Q9H7Z7 377 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 BCL2L10Q9HD36 194 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 CMTM6Q9NX76 183 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 ACAD8Q9UKU7 415 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 CORO2BQ9UQ03 480 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 ZNF337Q9Y3M9 751 aa17.7■□□□□ 0.42
CLN3-225ENST00000566824 UTP20O75691 2785 aaKnown RBP17.69■□□□□ 0.42
CLN3-225ENST00000566824 ARHGAP21Q5T5U3 1957 aa17.69■□□□□ 0.42
CLN3-225ENST00000566824 OR14I1A6ND48 311 aa17.69■□□□□ 0.42
CLN3-225ENST00000566824 EIF4E2O60573 245 aaKnown RBP17.69■□□□□ 0.42
CLN3-225ENST00000566824 NPPAP01160 153 aa17.69■□□□□ 0.42
CLN3-225ENST00000566824 DBIP07108 87 aaKnown RBP17.69■□□□□ 0.42
CLN3-225ENST00000566824 LINGO3P0C6S8 592 aa17.69■□□□□ 0.42
CLN3-225ENST00000566824 IL11P20809 199 aa17.69■□□□□ 0.42
CLN3-225ENST00000566824 AQP1P29972 269 aa17.69■□□□□ 0.42
CLN3-225ENST00000566824 P2RX1P51575 399 aa17.69■□□□□ 0.42
CLN3-225ENST00000566824 CYP51A1Q16850 503 aa17.69■□□□□ 0.42
CLN3-225ENST00000566824 C4orf17Q53FE4 359 aa17.69■□□□□ 0.42
CLN3-225ENST00000566824 MRPL2Q5T653 305 aaKnown RBP17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms