RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 C1orf21Q9H246 121 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 PTGES2Q9H7Z7 377 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 TPT1P8Q9HAU6 139 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 POLE3Q9NRF9 147 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 NDE1Q9NXR1 346 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 FAM215AQ9Y5M1 114 aa8.49□□□□□ -1.05
LDLR-211ENST00000560173 CSMD1Q96PZ7 3565 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 TRBV5-3A0A0A0MS03 114 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 A0A1W2PP18 115 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 H3BNH8 94 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 GYG2O15488 501 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 H6PDO95479 791 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 CHRM4P08173 479 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 HOXD4P09016 255 aaPredicted RBP8.48□□□□□ -1.05
LDLR-211ENST00000560173 HK1P19367 917 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 POU3F2P20265 443 aaPredicted RBP8.48□□□□□ -1.05
LDLR-211ENST00000560173 TCEA1P23193 301 aaKnown RBP8.48□□□□□ -1.05
LDLR-211ENST00000560173 MSX1P28360 303 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 PTGER4P35408 488 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 RNF144AP50876 292 aaPredicted RBP8.48□□□□□ -1.05
LDLR-211ENST00000560173 SMSP52788 366 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 ZNF117Q03924 483 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 GPR68Q15743 365 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 ZNF141Q15928 474 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 TMEM44Q2T9K0 475 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 ACSF3Q4G176 576 aaPredicted RBP8.48□□□□□ -1.05
LDLR-211ENST00000560173 PAGE3Q5JUK9 113 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 PDZK1Q5T2W1 519 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 C1orf185Q5T7R7 199 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 RTL6Q6ICC9 239 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 TYW3Q6IPR3 259 aaKnown RBP8.48□□□□□ -1.05
LDLR-211ENST00000560173 ARSKQ6UWY0 536 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 B3GNT6Q6ZMB0 384 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 FRRS1Q6ZNA5 592 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 MRGPRGQ86SM5 289 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 PM20D2Q8IYS1 436 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 ZNF808Q8N4W9 903 aaPredicted RBP8.48□□□□□ -1.05
LDLR-211ENST00000560173 ANKFN1Q8N957 763 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 OIT3Q8WWZ8 545 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 WDYHV1Q96HA8 205 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 SH3YL1Q96HL8 342 aaPredicted RBP8.48□□□□□ -1.05
LDLR-211ENST00000560173 TRNT1Q96Q11 434 aaKnown RBP8.48□□□□□ -1.05
LDLR-211ENST00000560173 KLHDC3Q9BQ90 382 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 BTBD10Q9BSF8 475 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 CCDC106Q9BWC9 280 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 SAP130Q9H0E3 1048 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 SLC25A37Q9NYZ2 338 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 KCNE5Q9UJ90 142 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 MKLN1Q9UL63 735 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 LIPT1Q9Y234 373 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 RPH3AQ9Y2J0 694 aaPredicted RBP8.48□□□□□ -1.05
LDLR-211ENST00000560173 WDR45Q9Y484 360 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 DTNAQ9Y4J8 743 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 PCDHB14Q9Y5E9 798 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 CACNA1CQ13936 2221 aa8.48□□□□□ -1.05
LDLR-211ENST00000560173 A0A087WZY1 265 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 A1L4Q6 167 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 OR2M5A3KFT3 312 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 C7orf72A4D263 438 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 SERINC4A6NH21 518 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 AHRRA9YTQ3 701 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 HCRTR2O43614 444 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 GMFGO60234 142 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 UGT2B17O75795 530 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 CLDN1O95832 211 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 GLI4P10075 376 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 ETFAP13804 333 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 GABRA1P14867 456 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 CPN1P15169 458 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 AGAP20933 346 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 CHMP24386 653 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 CRATP43155 626 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 STARP49675 285 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 LHX2P50458 406 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 NUP107P57740 925 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 HPCAP84074 193 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 CHRNEQ04844 493 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 RIPK1Q13546 671 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 MAPK11Q15759 364 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 MAPK14Q16539 360 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 SYPL1Q16563 259 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 PLPPR5Q32ZL2 321 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 NDUFAF6Q330K2 333 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 GLYR1Q49A26 553 aaPredicted RBP8.47□□□□□ -1.05
LDLR-211ENST00000560173 GPAT3Q53EU6 434 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 RAET1LQ5VY80 246 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 TMEM211Q6ICI0 200 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 AAGABQ6PD74 315 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 CBLN3Q6UW01 205 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 ENPP6Q6UWR7 440 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 RETREG3Q86VR2 466 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 C10orf67Q8IYJ2 551 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 ZNF619Q8N2I2 560 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 GTPBP8Q8N3Z3 284 aaPredicted RBP8.47□□□□□ -1.05
LDLR-211ENST00000560173 ZNF614Q8N883 585 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 B4GALNT2Q8NHY0 566 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 RP9Q8TA86 221 aaKnown RBP8.47□□□□□ -1.05
LDLR-211ENST00000560173 PHOSPHO1Q8TCT1 267 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 TSPEARQ8WU66 669 aa8.47□□□□□ -1.05
LDLR-211ENST00000560173 MCUR1Q96AQ8 359 aa8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 119.5 ms