RNA–Protein interactions for RNA: ENST00000559933.1

SPG11-220, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 2

Gene SPG11, Length 518 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-220ENST00000559933 CRISP3P54108 245 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 POLE2P56282 527 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 PPP1R8Q12972 351 aaKnown RBP4.78□□□□□ -1.64
SPG11-220ENST00000559933 BNIP2Q12982 314 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 KCNAB2Q13303 367 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 TRIM25Q14258 630 aaKnown RBP4.78□□□□□ -1.64
SPG11-220ENST00000559933 ZNHIT3Q15649 155 aaPredicted RBP4.78□□□□□ -1.64
SPG11-220ENST00000559933 INPP5JQ15735 1006 aaPredicted RBP4.78□□□□□ -1.64
SPG11-220ENST00000559933 CD226Q15762 336 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 NPTX1Q15818 432 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 EXT1Q16394 746 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 FXNQ16595 210 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 ZNF630Q2M218 657 aaPredicted RBP4.78□□□□□ -1.64
SPG11-220ENST00000559933 ARHGAP11BQ3KRB8 267 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 FLYWCH1Q4VC44 716 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 CYBRD1Q53TN4 286 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 ATAD3BQ5T9A4 648 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 PRAMEF20Q5VT98 475 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 FBXW10Q5XX13 1052 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 HLA-DQA1Q5Y7H0 255 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 LCN8Q6JVE9 175 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 REEP3Q6NUK4 255 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 BHLHB9Q6PI77 547 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 IL20RBQ6UXL0 311 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 UNQ6494/PRO21346Q6UXR6 183 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 APOOLQ6UXV4 268 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 LINC00696Q6ZRV3 163 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 TSEN54Q7Z6J9 526 aaKnown RBP4.78□□□□□ -1.64
SPG11-220ENST00000559933 MARCH3Q86UD3 253 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 DHFR2Q86XF0 187 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 PTRH1Q86Y79 214 aaKnown RBP4.78□□□□□ -1.64
SPG11-220ENST00000559933 ADGRG5Q8IZF4 528 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 SLC34A3Q8N130 599 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 BEST3Q8N1M1 668 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 ARHGAP24Q8N264 748 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 CLIP4Q8N3C7 705 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 ZNF248Q8NDW4 579 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 CHDHQ8NE62 594 aaPredicted RBP4.78□□□□□ -1.64
SPG11-220ENST00000559933 OR4C3Q8NH37 302 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 VANGL1Q8TAA9 524 aaPredicted RBP4.78□□□□□ -1.64
SPG11-220ENST00000559933 BBS10Q8TAM1 723 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 PSMF1Q92530 271 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 HGDQ93099 445 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 SLCO4A1Q96BD0 722 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 RSRC1Q96IZ7 334 aaKnown RBP4.78□□□□□ -1.64
SPG11-220ENST00000559933 TPD52L3Q96J77 140 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 MAP6Q96JE9 813 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 ART5Q96L15 291 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 NSMCE2Q96MF7 247 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 RAB3IPQ96QF0 476 aaPredicted RBP4.78□□□□□ -1.64
SPG11-220ENST00000559933 CCNL2Q96S94 520 aaPredicted RBP4.78□□□□□ -1.64
SPG11-220ENST00000559933 STACQ99469 402 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 SEPHS2Q99611 448 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 SH3GL1Q99961 368 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 BTBD2Q9BX70 525 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 PRDM14Q9GZV8 571 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 RAD21L1Q9H4I0 556 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 TMEM38AQ9H6F2 299 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 MMP25Q9NPA2 562 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 CTPS2Q9NRF8 586 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 DUSP22Q9NRW4 184 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 VNN3Q9NY84 501 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 GPR83Q9NYM4 423 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 ACTR3BQ9P1U1 418 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 MYOTQ9UBF9 498 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 MAGEL2Q9UJ55 1249 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 AURKCQ9UQB9 309 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 ZNF443Q9Y2A4 671 aaPredicted RBP4.78□□□□□ -1.64
SPG11-220ENST00000559933 WDR45Q9Y484 360 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 GMEB1Q9Y692 573 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 DOCK10Q96BY6 2186 aa4.78□□□□□ -1.64
SPG11-220ENST00000559933 NAV2Q8IVL1 2488 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 PINLYPA6NC86 204 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 AGAP5A6NIR3 686 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 OR6C76A6NM76 312 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 H3BNX3 289 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 K7EM74 188 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 AP3D1O14617 1153 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 TO15178 435 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 TSPAN2O60636 221 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 STX11O75558 287 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 TIPRLO75663 272 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 PPM1BO75688 479 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 UGT2B17O75795 530 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 CYP7B1O75881 506 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 MFN2O95140 757 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 IL33O95760 270 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 SEMG1P04279 462 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 C8BP07358 591 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 IFI6P09912 130 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 PABPC4LP0CB38 370 aaKnown RBP4.77□□□□□ -1.65
SPG11-220ENST00000559933 GKN3PP0CG01 181 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 CCL3P10147 92 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 ZNF16P17020 682 aaPredicted RBP4.77□□□□□ -1.65
SPG11-220ENST00000559933 ATP6V1C1P21283 382 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 DRD5P21918 477 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 RPS4Y1P22090 263 aaKnown RBP4.77□□□□□ -1.65
SPG11-220ENST00000559933 HTR2AP28223 471 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 IL12BP29460 328 aa4.77□□□□□ -1.65
SPG11-220ENST00000559933 RFC3P40938 356 aa4.77□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 60.7 ms