RNA–Protein interactions for RNA: ENST00000557884.5

USP3-205, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 958 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-205ENST00000557884 GNA13Q14344 377 aa13□□□□□ -0.33
USP3-205ENST00000557884 FGFBP1Q14512 234 aa13□□□□□ -0.33
USP3-205ENST00000557884 GANABQ14697 944 aaKnown RBP13□□□□□ -0.33
USP3-205ENST00000557884 ADRM1Q16186 407 aa13□□□□□ -0.33
USP3-205ENST00000557884 ZNF800Q2TB10 664 aaPredicted RBP eCLIP13□□□□□ -0.33
USP3-205ENST00000557884 RABL3Q5HYI8 236 aa13□□□□□ -0.33
USP3-205ENST00000557884 EMC4Q5J8M3 183 aa13□□□□□ -0.33
USP3-205ENST00000557884 GKAP1Q5VSY0 366 aaPredicted RBP13□□□□□ -0.33
USP3-205ENST00000557884 NANOGP8Q6NSW7 305 aa13□□□□□ -0.33
USP3-205ENST00000557884 ZNF585AQ6P3V2 769 aa13□□□□□ -0.33
USP3-205ENST00000557884 VRK2Q86Y07 508 aa13□□□□□ -0.33
USP3-205ENST00000557884 DOLPP1Q86YN1 238 aa13□□□□□ -0.33
USP3-205ENST00000557884 PEX5LQ8IYB4 626 aa13□□□□□ -0.33
USP3-205ENST00000557884 WDR60Q8WVS4 1066 aa13□□□□□ -0.33
USP3-205ENST00000557884 ABTB1Q969K4 478 aaPredicted RBP13□□□□□ -0.33
USP3-205ENST00000557884 UGT2B28Q9BY64 529 aa13□□□□□ -0.33
USP3-205ENST00000557884 NANOGQ9H9S0 305 aa13□□□□□ -0.33
USP3-205ENST00000557884 HHATLQ9HCP6 504 aa13□□□□□ -0.33
USP3-205ENST00000557884 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13□□□□□ -0.33
USP3-205ENST00000557884 MED17Q9NVC6 651 aa13□□□□□ -0.33
USP3-205ENST00000557884 ERRFI1Q9UJM3 462 aaPredicted RBP13□□□□□ -0.33
USP3-205ENST00000557884 CAMK2AQ9UQM7 478 aa13□□□□□ -0.33
USP3-205ENST00000557884 POLEQ07864 2286 aa13□□□□□ -0.33
USP3-205ENST00000557884 A0A0G2JPF8 293 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 HNRNPCL2B2RXH8 293 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 HNRNPCL3B7ZW38 293 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 CCL21O00585 134 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 BCKDKO14874 412 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 HNRNPCL1O60812 293 aaKnown RBP12.99□□□□□ -0.33
USP3-205ENST00000557884 DCTN3O75935 186 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 DBIP07108 87 aaKnown RBP12.99□□□□□ -0.33
USP3-205ENST00000557884 HNRNPCL4P0DMR1 293 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 IL7RP16871 459 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 RPS4Y1P22090 263 aaKnown RBP12.99□□□□□ -0.33
USP3-205ENST00000557884 AQP1P29972 269 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 STARP49675 285 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 P2RX1P51575 399 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 ZNF41P51814 821 aaPredicted RBP12.99□□□□□ -0.33
USP3-205ENST00000557884 B3GALT5-AS1P59052 145 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 KCNJ10P78508 379 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 SRSF1Q07955 248 aaKnown RBP eCLIP12.99□□□□□ -0.33
USP3-205ENST00000557884 CRYZQ08257 329 aaKnown RBP12.99□□□□□ -0.33
USP3-205ENST00000557884 SKP2Q13309 424 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 SCARB2Q14108 478 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 GXYLT1Q4G148 440 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 C4orf17Q53FE4 359 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 WLSQ5T9L3 541 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 AP1ARQ63HQ0 302 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 NCCRP1Q6ZVX7 275 aaPredicted RBP12.99□□□□□ -0.33
USP3-205ENST00000557884 PTOV1Q86YD1 416 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 CCDC197Q8NCU1 140 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 OR52P1PQ8NH57 321 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 OR10A6Q8NH74 314 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 BBS10Q8TAM1 723 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 CNOT9Q92600 299 aaKnown RBP12.99□□□□□ -0.33
USP3-205ENST00000557884 CMTM5Q96DZ9 223 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 LRRC37BQ96QE4 947 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 TIMP4Q99727 224 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 NPAS1Q99742 590 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 LAT2Q9GZY6 243 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 TMEM38AQ9H6F2 299 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 KAT8Q9H7Z6 458 aaKnown RBP12.99□□□□□ -0.33
USP3-205ENST00000557884 CACYBPQ9HB71 228 aaKnown RBP12.99□□□□□ -0.33
USP3-205ENST00000557884 SUCOQ9UBS9 1254 aaKnown RBP12.99□□□□□ -0.33
USP3-205ENST00000557884 ICAM5Q9UMF0 924 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 SLC5A6Q9Y289 635 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 SLC35A3Q9Y2D2 325 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 MRPS18CQ9Y3D5 142 aaKnown RBP12.99□□□□□ -0.33
USP3-205ENST00000557884 COL12A1Q99715 3063 aa12.99□□□□□ -0.33
USP3-205ENST00000557884 USP9XQ93008 2570 aaPredicted RBP12.98□□□□□ -0.33
USP3-205ENST00000557884 DSPPQ9NZW4 1301 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 A0A087WZY1 265 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 A0A1B0GUH1 482 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 OR2M5A3KFT3 312 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 EIF4E2O60573 245 aaKnown RBP12.98□□□□□ -0.33
USP3-205ENST00000557884 AGFG2O95081 481 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 PGM3O95394 542 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 NPPAP01160 153 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 NID1P14543 1247 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 SLC6A2P23975 617 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 RYKP34925 604 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 PGM1P36871 562 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 ADH7P40394 386 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 CPA2P48052 419 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 NUDT2P50583 147 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 GFRA1P56159 465 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 PLAURQ03405 335 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 SRYQ05066 204 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 ART3Q13508 389 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 TOMM34Q15785 309 aaPredicted RBP12.98□□□□□ -0.33
USP3-205ENST00000557884 PLPPR5Q32ZL2 321 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 LIN52Q52LA3 116 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 NHSL2Q5HYW2 709 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 MRPL2Q5T653 305 aaKnown RBP12.98□□□□□ -0.33
USP3-205ENST00000557884 VASNQ6EMK4 673 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 REEP3Q6NUK4 255 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 AAGABQ6PD74 315 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 ZNF836Q6ZNA1 936 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 ZZZ3Q8IYH5 903 aa12.98□□□□□ -0.33
USP3-205ENST00000557884 C11orf65Q8NCR3 313 aa12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms