RNA–Protein interactions for RNA: ENST00000556534.1

SCFD1-221, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 864 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-221ENST00000556534 EIF3LQ9Y262 564 aaKnown RBP3.05□□□□□ -1.92
SCFD1-221ENST00000556534 DHRS7CA6NNS2 312 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 ANKRD30BLA7E2S9 258 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 CASKO14936 926 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 EMC8O43402 210 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 SPAG6O75602 509 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 CABYRO75952 493 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 OR4F21O95013 312 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 CA3P07451 260 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 THRBP10828 461 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 BCKDHAP12694 445 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 XRCC1P18887 633 aaPredicted RBP3.04□□□□□ -1.92
SCFD1-221ENST00000556534 DRD5P21918 477 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 HNRNPA2B1P22626 353 aaKnown RBP3.04□□□□□ -1.92
SCFD1-221ENST00000556534 PRPHP41219 470 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 STARP49675 285 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 RIPK4P57078 832 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 OTUD4Q01804 1114 aaKnown RBP3.04□□□□□ -1.92
SCFD1-221ENST00000556534 EGFEM1PQ0D2K5 195 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 PSG7Q13046 419 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 SNTB2Q13425 540 aaKnown RBP3.04□□□□□ -1.92
SCFD1-221ENST00000556534 EXOSC2Q13868 293 aaKnown RBP3.04□□□□□ -1.92
SCFD1-221ENST00000556534 MAJINQ3KP22 176 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 USH1GQ495M9 461 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 CCDC14Q49A88 953 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 NADK2Q4G0N4 442 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 TMEM41BQ5BJD5 291 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 DCST2Q5T1A1 773 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 RGS9BPQ6ZS82 235 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 KRTAP5-2Q701N4 177 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 HSD11B1LQ7Z5J1 315 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 TMEM110Q86TL2 294 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 GCNT2Q8N0V5 402 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 HAVCR1Q96D42 359 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 IL4I1Q96RQ9 567 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 TESK2Q96S53 571 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 TPPP3Q9BW30 176 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 COMMD4Q9H0A8 199 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 SLC25A51Q9H1U9 297 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 RPAP3Q9H6T3 665 aaPredicted RBP3.04□□□□□ -1.92
SCFD1-221ENST00000556534 RBM28Q9NW13 759 aaKnown RBP3.04□□□□□ -1.92
SCFD1-221ENST00000556534 ONECUT1Q9UBC0 465 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 RABL2BQ9UNT1 228 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 KIF3AQ9Y496 699 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 GMPPBQ9Y5P6 360 aa3.04□□□□□ -1.92
SCFD1-221ENST00000556534 H0YCG3 227 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 MPHOSPH10O00566 681 aaKnown RBP3.03□□□□□ -1.92
SCFD1-221ENST00000556534 SDHDO14521 159 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 RIPK2O43353 540 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 LYPLA1O75608 230 aaPredicted RBP3.03□□□□□ -1.92
SCFD1-221ENST00000556534 SEMG1P04279 462 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 GSTT2P0CG29 244 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 GSTT2BP0CG30 244 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 CALCBP10092 127 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 EPB41P11171 864 aaKnown RBP3.03□□□□□ -1.92
SCFD1-221ENST00000556534 PAX7P23759 505 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 PTGFRP43088 359 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 ACTR1AP61163 376 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 VLDLRP98155 873 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 IL17AQ16552 155 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 NCR3LG1Q68D85 454 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 IL34Q6ZMJ4 242 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 LPCAT2Q7L5N7 544 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 LHFPL4Q7Z7J7 247 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 EFCAB13Q8IY85 973 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 STKLD1Q8NE28 680 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 BBS1Q8NFJ9 593 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 OR52M1Q8NGK5 317 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 OR10T2Q8NGX3 314 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 OR2T3Q8NH03 318 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 N4BP2L2Q92802 583 aaPredicted RBP3.03□□□□□ -1.92
SCFD1-221ENST00000556534 ELMO2Q96JJ3 720 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 C4orf36Q96KX1 117 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 GPA33Q99795 319 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 TMEM117Q9H0C3 514 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 RMND5AQ9H871 391 aa3.03□□□□□ -1.92
SCFD1-221ENST00000556534 UTP6Q9NYH9 597 aaKnown RBP3.03□□□□□ -1.92
SCFD1-221ENST00000556534 SAMD4AQ9UPU9 718 aaKnown RBP3.03□□□□□ -1.92
SCFD1-221ENST00000556534 CCDC7Q96M83 1385 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 ANKRD30BQ9BXX2 1392 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 SYNJ2BP-COX16A0A087WUM0 186 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 CLRN2A0PK11 232 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 WASHC1A8K0Z3 465 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 GPR89AB7ZAQ6 455 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 XPO1O14980 1071 aaKnown RBP3.02□□□□□ -1.93
SCFD1-221ENST00000556534 MAPK13O15264 365 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 TRIM3O75382 744 aaPredicted RBP3.02□□□□□ -1.93
SCFD1-221ENST00000556534 GPX5O75715 221 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 IDH1O75874 414 aaKnown RBP3.02□□□□□ -1.93
SCFD1-221ENST00000556534 MBD3O95983 291 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 ASNSP08243 561 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 IQCF3P0C7M6 154 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 GPR89BP0CG08 455 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 CLUP10909 449 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 PDHBP11177 359 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 ANXA3P12429 323 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 H2AFXP16104 143 aaPredicted RBP3.02□□□□□ -1.93
SCFD1-221ENST00000556534 DPP4P27487 766 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 PSMA5P28066 241 aa3.02□□□□□ -1.93
SCFD1-221ENST00000556534 GBX2P52951 348 aaPredicted RBP3.02□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms