RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 ATG16L1Q676U5 607 aa10.64□□□□□ -0.71
VRK1-204ENST00000555351 OR4F3Q6IEY1 312 aa10.64□□□□□ -0.71
VRK1-204ENST00000555351 HEPHL1Q6MZM0 1159 aa10.64□□□□□ -0.71
VRK1-204ENST00000555351 FAM214BQ7L5A3 538 aa10.64□□□□□ -0.71
VRK1-204ENST00000555351 C6orf120Q7Z4R8 191 aa10.64□□□□□ -0.71
VRK1-204ENST00000555351 LUZP2Q86TE4 346 aa10.64□□□□□ -0.71
VRK1-204ENST00000555351 FNDC9Q8TBE3 224 aa10.64□□□□□ -0.71
VRK1-204ENST00000555351 PHOSPHO1Q8TCT1 267 aa10.64□□□□□ -0.71
VRK1-204ENST00000555351 FIG4Q92562 907 aa10.64□□□□□ -0.71
VRK1-204ENST00000555351 ARSGQ96EG1 525 aa10.64□□□□□ -0.71
VRK1-204ENST00000555351 GMPPAQ96IJ6 420 aaPredicted RBP10.64□□□□□ -0.71
VRK1-204ENST00000555351 GPATCH1Q9BRR8 931 aaKnown RBP10.64□□□□□ -0.71
VRK1-204ENST00000555351 SLC39A3Q9BRY0 314 aa10.64□□□□□ -0.71
VRK1-204ENST00000555351 NUF2Q9BZD4 464 aa10.64□□□□□ -0.71
VRK1-204ENST00000555351 CXXC4Q9H2H0 198 aa10.64□□□□□ -0.71
VRK1-204ENST00000555351 EXD2Q9NVH0 621 aa10.64□□□□□ -0.71
VRK1-204ENST00000555351 MCTS1Q9ULC4 181 aaKnown RBP10.64□□□□□ -0.71
VRK1-204ENST00000555351 ICAM5Q9UMF0 924 aa10.64□□□□□ -0.71
VRK1-204ENST00000555351 MED12Q93074 2177 aa10.64□□□□□ -0.71
VRK1-204ENST00000555351 RNF103-CHMP3A0A140T963 221 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 SH3D21A4FU49 640 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 GJE1A6NN92 205 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 E9PBE3 544 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 NTN1O95631 604 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 CGAP01215 116 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 PABPC4LP0CB38 370 aaKnown RBP10.63□□□□□ -0.71
VRK1-204ENST00000555351 MATN1P21941 496 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 SOAT1P35610 550 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 CD79BP40259 229 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 WDR4P57081 412 aaKnown RBP10.63□□□□□ -0.71
VRK1-204ENST00000555351 CASP8Q14790 479 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 CTU2Q2VPK5 515 aaKnown RBP10.63□□□□□ -0.71
VRK1-204ENST00000555351 GTF2IRD2BQ6EKJ0 949 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 BTLAQ7Z6A9 289 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 GALNT10Q86SR1 603 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 GTF2IRD2Q86UP8 949 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 CDC20BQ86Y33 519 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 CLECL1Q8IZS7 167 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 GLB1L3Q8NCI6 653 aaPredicted RBP10.63□□□□□ -0.71
VRK1-204ENST00000555351 OR5M1Q8NGP8 315 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 OR6K3Q8NGY3 331 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 OR10D3Q8NH80 312 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 OR2V1Q8NHB1 315 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 NUDT8Q8WV74 236 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 TLCD1Q96CP7 247 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 MBD6Q96DN6 1003 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 NEURL3Q96EH8 262 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 ZNF845Q96IR2 970 aaPredicted RBP10.63□□□□□ -0.71
VRK1-204ENST00000555351 SLC35G5Q96KT7 338 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 MRGPRX4Q96LA9 322 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 RNF145Q96MT1 663 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 CCDC115Q96NT0 180 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 FOXC2Q99958 501 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 ZNF350Q9GZX5 532 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 GP6Q9HCN6 339 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 FANCFQ9NPI8 374 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 TIGARQ9NQ88 270 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 AIG1Q9NVV5 245 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 BTNL2Q9UIR0 455 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 ST6GALNAC2Q9UJ37 374 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 PRDM4Q9UKN5 801 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 EMC9Q9Y3B6 208 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 PCNX3Q9H6A9 2034 aa10.63□□□□□ -0.71
VRK1-204ENST00000555351 H0YC42 278 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 GTPBP1O00178 669 aaKnown RBP10.62□□□□□ -0.71
VRK1-204ENST00000555351 SDHDO14521 159 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 EIF1AYO14602 144 aaKnown RBP10.62□□□□□ -0.71
VRK1-204ENST00000555351 KLF11O14901 512 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 ZNF264O43296 627 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 SS18L1O75177 396 aaPredicted RBP10.62□□□□□ -0.71
VRK1-204ENST00000555351 SYNGR4O95473 234 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 S100A3P33764 101 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 EIF1AXP47813 144 aaKnown RBP10.62□□□□□ -0.71
VRK1-204ENST00000555351 TPD52P55327 224 aaPredicted RBP10.62□□□□□ -0.71
VRK1-204ENST00000555351 PHC1P78364 1004 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 SNTB1Q13884 538 aaKnown RBP10.62□□□□□ -0.71
VRK1-204ENST00000555351 BEND6Q5SZJ8 279 aaPredicted RBP10.62□□□□□ -0.71
VRK1-204ENST00000555351 DDX59Q5T1V6 619 aaKnown RBP eCLIP10.62□□□□□ -0.71
VRK1-204ENST00000555351 ATAD3BQ5T9A4 648 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 SAXO2Q658L1 398 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 VWA1Q6PCB0 445 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 LILRA2Q8N149 483 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 TRIML2Q8N7C3 387 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 CNEP1R1Q8N9A8 125 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 GATSQ8NAP1 163 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 OR4A15Q8NGL6 344 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 OR5W2Q8NH69 310 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 OR5AK3PQ8NH89 298 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 LINC01560Q8TB33 94 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 POC1BQ8TC44 478 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 GPR119Q8TDV5 335 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 PMM1Q92871 262 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 ARL8AQ96BM9 186 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 OTUB1Q96FW1 271 aaPredicted RBP10.62□□□□□ -0.71
VRK1-204ENST00000555351 SH3YL1Q96HL8 342 aaPredicted RBP10.62□□□□□ -0.71
VRK1-204ENST00000555351 MAELQ96JY0 434 aaKnown RBP10.62□□□□□ -0.71
VRK1-204ENST00000555351 PPP1R36Q96LQ0 422 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 KLHL15Q96M94 604 aa10.62□□□□□ -0.71
VRK1-204ENST00000555351 PAIP2Q9BPZ3 127 aaKnown RBP10.62□□□□□ -0.71
VRK1-204ENST00000555351 PRRG4Q9BZD6 226 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms