RNA–Protein interactions for RNA: ENST00000553340.1

SYNE3-202, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

TSL 1 (best) BASIC

Gene SYNE3, Length 2,615 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-202ENST00000553340 RAB3BP20337 219 aa16.32■□□□□ 0.2
SYNE3-202ENST00000553340 DNASE1P24855 282 aa16.32■□□□□ 0.2
SYNE3-202ENST00000553340 ZNF81P51508 661 aa16.32■□□□□ 0.2
SYNE3-202ENST00000553340 SLC16A1P53985 500 aa16.32■□□□□ 0.2
SYNE3-202ENST00000553340 CAMK2DQ13557 499 aa16.32■□□□□ 0.2
SYNE3-202ENST00000553340 GSG1Q2KHT4 349 aa16.32■□□□□ 0.2
SYNE3-202ENST00000553340 CDONQ4KMG0 1287 aa16.32■□□□□ 0.2
SYNE3-202ENST00000553340 FNDC3BQ53EP0 1204 aaKnown RBP16.32■□□□□ 0.2
SYNE3-202ENST00000553340 RNASE12Q5GAN4 147 aaKnown RBP16.32■□□□□ 0.2
SYNE3-202ENST00000553340 GPR139Q6DWJ6 353 aa16.32■□□□□ 0.2
SYNE3-202ENST00000553340 PXKQ7Z7A4 578 aa16.32■□□□□ 0.2
SYNE3-202ENST00000553340 OR2L5Q8NG80 312 aa16.32■□□□□ 0.2
SYNE3-202ENST00000553340 KAT2AQ92830 837 aa16.32■□□□□ 0.2
SYNE3-202ENST00000553340 KISS1RQ969F8 398 aaPredicted RBP16.32■□□□□ 0.2
SYNE3-202ENST00000553340 HCAR1Q9BXC0 346 aa16.32■□□□□ 0.2
SYNE3-202ENST00000553340 XKR8Q9H6D3 395 aa16.32■□□□□ 0.2
SYNE3-202ENST00000553340 CLEC4AQ9UMR7 237 aa16.32■□□□□ 0.2
SYNE3-202ENST00000553340 MRPS7Q9Y2R9 242 aaKnown RBP16.32■□□□□ 0.2
SYNE3-202ENST00000553340 GOLGA4Q13439 2230 aaKnown RBP16.32■□□□□ 0.2
SYNE3-202ENST00000553340 OR5K3A6NET4 321 aa16.32■□□□□ 0.2
SYNE3-202ENST00000553340 BHLHE40O14503 412 aa16.32■□□□□ 0.2
SYNE3-202ENST00000553340 POLR2CP19387 275 aaPredicted RBP16.32■□□□□ 0.2
SYNE3-202ENST00000553340 PRKACBP22694 351 aa16.32■□□□□ 0.2
SYNE3-202ENST00000553340 CERS1P27544 350 aa16.32■□□□□ 0.2
SYNE3-202ENST00000553340 LGALSLQ3ZCW2 172 aaPredicted RBP16.32■□□□□ 0.2
SYNE3-202ENST00000553340 FRRS1Q6ZNA5 592 aa16.32■□□□□ 0.2
SYNE3-202ENST00000553340 NXPE2Q96DL1 559 aa16.32■□□□□ 0.2
SYNE3-202ENST00000553340 C7orf50Q9BRJ6 194 aaKnown RBP16.32■□□□□ 0.2
SYNE3-202ENST00000553340 MTHFD2LQ9H903 347 aaPredicted RBP16.32■□□□□ 0.2
SYNE3-202ENST00000553340 SIDT1Q9NXL6 827 aaKnown RBP16.32■□□□□ 0.2
SYNE3-202ENST00000553340 GIMAP1-GIMAP5A0A087WTJ2 511 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 FAM86C2PA6NEL3 165 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 ANTXRLA6NF34 631 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 J3QLW9 94 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 SC5DO75845 299 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 RHOP08100 348 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 SYPP08247 313 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 SULT1A3P0DMM9 295 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 SULT1A4P0DMN0 295 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 ZNF19P17023 458 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 TEAD1P28347 426 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 RAB28P51157 221 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 CCR6P51684 374 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 DGCR2P98153 550 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 CDK3Q00526 305 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 EXOSC2Q13868 293 aaKnown RBP16.31■□□□□ 0.2
SYNE3-202ENST00000553340 ELAVL3Q14576 367 aaKnown RBP16.31■□□□□ 0.2
SYNE3-202ENST00000553340 GRK1Q15835 563 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 HNRNPA1L2Q32P51 320 aaKnown RBP16.31■□□□□ 0.2
SYNE3-202ENST00000553340 ACSM3Q53FZ2 586 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 CLLU1Q5K131 121 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 HEPHL1Q6MZM0 1159 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 FGD2Q7Z6J4 655 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 GLRX5Q86SX6 157 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 C12orf40Q86WS4 652 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 FAM20CQ8IXL6 584 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 SLC44A3Q8N4M1 653 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 GIMAP1Q8WWP7 306 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 GIMAP5Q96F15 307 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 C4orf36Q96KX1 117 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 HS6ST2Q96MM7 605 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 LGR4Q9BXB1 951 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 TMEM168Q9H0V1 697 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 MRPS30Q9NP92 439 aaKnown RBP16.31■□□□□ 0.2
SYNE3-202ENST00000553340 EDDM13A0A1B0GTR0 161 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 LRRN3E7EW58 273 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 PRR23D1E9PI22 279 aaPredicted RBP16.31■□□□□ 0.2
SYNE3-202ENST00000553340 SSNA1O43805 119 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 OR7A10O76100 309 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 PCCBP05166 539 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 PRR23D2P0DMB1 279 aaPredicted RBP16.31■□□□□ 0.2
SYNE3-202ENST00000553340 ADH5P11766 374 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 ACVR1BP36896 505 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 FXYD6P3P58550 94 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 ERVK-21P61565 698 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 AGERQ15109 404 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 LTB4RQ15722 352 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 ST3GAL2Q16842 350 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 BTN2A1Q7KYR7 527 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 COMMD7Q86VX2 200 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 PIAS4Q8N2W9 510 aaPredicted RBP16.31■□□□□ 0.2
SYNE3-202ENST00000553340 LNX2Q8N448 690 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 FBXL6Q8N531 539 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 SLC16A11Q8NCK7 471 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 C17orf47Q8NEP4 570 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 RPLP0P6Q8NHW5 317 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 NXPE3Q969Y0 559 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 C12orf66Q96MD2 445 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 ZNF681Q96N22 645 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 TEAD3Q99594 435 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 ACTR6Q9GZN1 396 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 LRRN3Q9H3W5 708 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 UBQLN2Q9UHD9 624 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 SCP2D1Q9UJQ7 156 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 ZMIZ1Q9ULJ6 1067 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 WDR45Q9Y484 360 aa16.31■□□□□ 0.2
SYNE3-202ENST00000553340 UGT2B7P16662 529 aa16.3■□□□□ 0.2
SYNE3-202ENST00000553340 FUT1P19526 365 aa16.3■□□□□ 0.2
SYNE3-202ENST00000553340 ENPP1P22413 925 aa16.3■□□□□ 0.2
SYNE3-202ENST00000553340 SLC22A10Q63ZE4 541 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms