RNA–Protein interactions for RNA: ENST00000550611.1

LIMA1-206, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 543 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-206ENST00000550611 PAK5Q9P286 719 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 KIF17Q9P2E2 1029 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 HEY2Q9UBP5 337 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 FETUBQ9UGM5 382 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 STEAP1Q9UHE8 339 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 AMFRQ9UKV5 643 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 CHCHD2Q9Y6H1 151 aaPredicted RBP3.2□□□□□ -1.9
LIMA1-206ENST00000550611 PHF3Q92576 2039 aaKnown RBP3.2□□□□□ -1.9
LIMA1-206ENST00000550611 NOTCH3Q9UM47 2321 aa3.2□□□□□ -1.9
LIMA1-206ENST00000550611 TNFSF12-TNFSF13A0A0A6YY99 330 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 SYCE3A1L190 88 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 MAGEB16A2A368 324 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 LRIT2A6NDA9 550 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 CASKO14936 926 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 TMCC2O75069 709 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 AVILO75366 819 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 TNFSF13O75888 250 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 WDR47O94967 919 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 ACSL3O95573 720 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 AGR2O95994 175 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 SERPIND1P05546 499 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 TPM1P09493 284 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 TMIGD3P0DMS9 266 aaPredicted RBP3.19□□□□□ -1.9
LIMA1-206ENST00000550611 TPSB2P20231 275 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 CRYGSP22914 178 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 CNTFP26441 200 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 HNRNPH1P31943 449 aaKnown RBP3.19□□□□□ -1.9
LIMA1-206ENST00000550611 MAGEA3P43357 314 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 TRPC1P48995 793 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 CDK9P50750 372 aaKnown RBP3.19□□□□□ -1.9
LIMA1-206ENST00000550611 LIM2P55344 173 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 AP1S2P56377 157 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 ARL4CP56559 192 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 TIRAPP58753 221 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 SUMO2P61956 95 aaKnown RBP3.19□□□□□ -1.9
LIMA1-206ENST00000550611 ASPHQ12797 758 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 TNK1Q13470 666 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 EFTUD2Q15029 972 aaKnown RBP eCLIP3.19□□□□□ -1.9
LIMA1-206ENST00000550611 SF3B4Q15427 424 aaKnown RBP eCLIP3.19□□□□□ -1.9
LIMA1-206ENST00000550611 SPA17Q15506 151 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 TPSAB1Q15661 275 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 CCNG2Q16589 344 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 NTRK2Q16620 822 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 PPP1R3AQ16821 1122 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 CHRFAM7AQ494W8 412 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 ZNF585BQ52M93 769 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 TOR1AIP1Q5JTV8 583 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 DCST1Q5T197 706 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 GFI1BQ5VTD9 330 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 ZNF470Q6ECI4 717 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 LRRC8EQ6NSJ5 796 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 C4orf22Q6V702 233 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 DGAT2L6Q6ZPD8 337 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 PEX26Q7Z412 305 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 MTERF4Q7Z6M4 381 aaKnown RBP3.19□□□□□ -1.9
LIMA1-206ENST00000550611 MOGAT3Q86VF5 341 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 SLC44A2Q8IWA5 706 aaPredicted RBP3.19□□□□□ -1.9
LIMA1-206ENST00000550611 C9orf40Q8IXQ3 194 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 LMNTD2Q8IXW0 634 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 KLHDC8AQ8IYD2 350 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 PM20D2Q8IYS1 436 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 DND1Q8IYX4 353 aaKnown RBP3.19□□□□□ -1.9
LIMA1-206ENST00000550611 TBC1D19Q8N5T2 526 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 OTUD6BQ8N6M0 293 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 UBL4BQ8N7F7 174 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 ZNF441Q8N8Z8 693 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 OR14A16Q8NHC5 309 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 SLC2A12Q8TD20 617 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 WDR60Q8WVS4 1066 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 C1orf54Q8WWF1 131 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 SLC44A1Q8WWI5 657 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 SLC5A11Q8WWX8 675 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 ATL1Q8WXF7 558 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 SPACA9Q96E40 222 aaPredicted RBP3.19□□□□□ -1.9
LIMA1-206ENST00000550611 PDLIM5Q96HC4 596 aaKnown RBP3.19□□□□□ -1.9
LIMA1-206ENST00000550611 WFIKKN1Q96NZ8 548 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 SERINC2Q96SA4 455 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 CSF3RQ99062 836 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 PAIP2Q9BPZ3 127 aaKnown RBP3.19□□□□□ -1.9
LIMA1-206ENST00000550611 AIF1LQ9BQI0 150 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 SFXN3Q9BWM7 321 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 UGT2B28Q9BY64 529 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 ANGPTL4Q9BY76 406 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 TSGA10Q9BZW7 698 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 OR8D2Q9GZM6 311 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 EXO5Q9H790 373 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 NT5DC2Q9H857 520 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 SAYSD1Q9NPB0 183 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 C6orf203Q9P0P8 240 aaPredicted RBP3.19□□□□□ -1.9
LIMA1-206ENST00000550611 NDRG3Q9UGV2 375 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 FBXO5Q9UKT4 447 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 IKZF3Q9UKT9 509 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 BOKQ9UMX3 212 aaPredicted RBP3.19□□□□□ -1.9
LIMA1-206ENST00000550611 DAPP1Q9UN19 280 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 PACSIN2Q9UNF0 486 aaPredicted RBP3.19□□□□□ -1.9
LIMA1-206ENST00000550611 ZNF148Q9UQR1 794 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 EIF3LQ9Y262 564 aaKnown RBP3.19□□□□□ -1.9
LIMA1-206ENST00000550611 CLCA3PQ9Y6N3 262 aa3.19□□□□□ -1.9
LIMA1-206ENST00000550611 HEATR5BQ9P2D3 2071 aa3.18□□□□□ -1.9
LIMA1-206ENST00000550611 C15orf38-AP3S2A0A0A6YYH1 394 aa3.18□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms