RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 GATSQ8NAP1 163 aa15□□□□□ -0.01
VPS29-204ENST00000548259 SPATA4Q8NEY3 305 aa15□□□□□ -0.01
VPS29-204ENST00000548259 OR6Y1Q8NGX8 325 aa15□□□□□ -0.01
VPS29-204ENST00000548259 OR2W6PQ8NHA6 318 aa15□□□□□ -0.01
VPS29-204ENST00000548259 ARL8AQ96BM9 186 aa15□□□□□ -0.01
VPS29-204ENST00000548259 SH3YL1Q96HL8 342 aaPredicted RBP15□□□□□ -0.01
VPS29-204ENST00000548259 AMDHD1Q96NU7 426 aa15□□□□□ -0.01
VPS29-204ENST00000548259 UBQLN4Q9NRR5 601 aa15□□□□□ -0.01
VPS29-204ENST00000548259 SIRT5Q9NXA8 310 aa15□□□□□ -0.01
VPS29-204ENST00000548259 ZNF225Q9UK10 706 aa15□□□□□ -0.01
VPS29-204ENST00000548259 A0A096LNT2 108 aa14.99□□□□□ -0.01
VPS29-204ENST00000548259 GXYLT2A0PJZ3 443 aa14.99□□□□□ -0.01
VPS29-204ENST00000548259 KIF2AO00139 706 aaPredicted RBP14.99□□□□□ -0.01
VPS29-204ENST00000548259 LYZL6O75951 148 aa14.99□□□□□ -0.01
VPS29-204ENST00000548259 HSPA4LO95757 839 aa14.99□□□□□ -0.01
VPS29-204ENST00000548259 ENO1P06733 434 aaKnown RBP14.99□□□□□ -0.01
VPS29-204ENST00000548259 GGT1P19440 569 aa14.99□□□□□ -0.01
VPS29-204ENST00000548259 TTKP33981 857 aa14.99□□□□□ -0.01
VPS29-204ENST00000548259 GPC1P35052 558 aa14.99□□□□□ -0.01
VPS29-204ENST00000548259 SERPINB4P48594 390 aa14.99□□□□□ -0.01
VPS29-204ENST00000548259 MANFP55145 182 aaKnown RBP14.99□□□□□ -0.01
VPS29-204ENST00000548259 IRX1P78414 480 aaPredicted RBP14.99□□□□□ -0.01
VPS29-204ENST00000548259 GUCY2DQ02846 1103 aa14.99□□□□□ -0.01
VPS29-204ENST00000548259 IMPG1Q17R60 797 aa14.99□□□□□ -0.01
VPS29-204ENST00000548259 FAM166AQ6J272 317 aa14.99□□□□□ -0.01
VPS29-204ENST00000548259 SLC22A25Q6T423 547 aa14.99□□□□□ -0.01
VPS29-204ENST00000548259 MUC15Q8N387 334 aa14.99□□□□□ -0.01
VPS29-204ENST00000548259 OR4C3Q8NH37 302 aa14.99□□□□□ -0.01
VPS29-204ENST00000548259 PIK3R3Q92569 461 aa14.99□□□□□ -0.01
VPS29-204ENST00000548259 DHRS9Q9BPW9 319 aa14.99□□□□□ -0.01
VPS29-204ENST00000548259 ACSS3Q9H6R3 686 aa14.99□□□□□ -0.01
VPS29-204ENST00000548259 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP14.98□□□□□ -0.012e-11■■■■■ 31.7
VPS29-204ENST00000548259 NTN1O95631 604 aa14.98□□□□□ -0.01
VPS29-204ENST00000548259 NUDT14O95848 222 aa14.98□□□□□ -0.01
VPS29-204ENST00000548259 IGKV1D-16P01601 117 aa14.98□□□□□ -0.01
VPS29-204ENST00000548259 DHRS4L1P0CG22 281 aa14.98□□□□□ -0.01
VPS29-204ENST00000548259 ZNF16P17020 682 aaPredicted RBP14.98□□□□□ -0.01
VPS29-204ENST00000548259 PTAFRP25105 342 aa14.98□□□□□ -0.01
VPS29-204ENST00000548259 SLC7A1P30825 629 aa14.98□□□□□ -0.01
VPS29-204ENST00000548259 MAGEA12P43365 314 aa14.98□□□□□ -0.01
VPS29-204ENST00000548259 OR3A2P47893 321 aa14.98□□□□□ -0.01
VPS29-204ENST00000548259 PKNOX1P55347 436 aa14.98□□□□□ -0.01
VPS29-204ENST00000548259 LSM11P83369 360 aaKnown RBP eCLIP14.98□□□□□ -0.019e-7■■■□□ 16.4
VPS29-204ENST00000548259 CHRNB3Q05901 458 aa14.98□□□□□ -0.01
VPS29-204ENST00000548259 Q6ZSR9 355 aa14.98□□□□□ -0.01
VPS29-204ENST00000548259 IKBIPQ70UQ0 350 aa14.98□□□□□ -0.01
VPS29-204ENST00000548259 ATG4DQ86TL0 474 aaPredicted RBP14.98□□□□□ -0.01
VPS29-204ENST00000548259 ZNF525Q8N782 197 aa14.98□□□□□ -0.01
VPS29-204ENST00000548259 ZFP28Q8NHY6 868 aa14.98□□□□□ -0.01
VPS29-204ENST00000548259 FAM76AQ8TAV0 307 aa14.98□□□□□ -0.01
VPS29-204ENST00000548259 MANSC1Q9H8J5 431 aa14.98□□□□□ -0.01
VPS29-204ENST00000548259 MYNNQ9NPC7 610 aa14.98□□□□□ -0.01
VPS29-204ENST00000548259 GPC6Q9Y625 555 aaPredicted RBP14.98□□□□□ -0.01
VPS29-204ENST00000548259 PMF1-BGLAPU3KQ54 211 aa14.98□□□□□ -0.01
VPS29-204ENST00000548259 A0A1W2PQD3 144 aa14.97□□□□□ -0.01
VPS29-204ENST00000548259 H3BNH8 94 aa14.97□□□□□ -0.01
VPS29-204ENST00000548259 NKX2-2O95096 273 aa14.97□□□□□ -0.01
VPS29-204ENST00000548259 IGHV4-31P0DP07 118 aa14.97□□□□□ -0.01
VPS29-204ENST00000548259 FABP6P51161 128 aa14.97□□□□□ -0.01
VPS29-204ENST00000548259 PRKAG1P54619 331 aa14.97□□□□□ -0.01
VPS29-204ENST00000548259 TMEM176BQ3YBM2 270 aaPredicted RBP14.97□□□□□ -0.01
VPS29-204ENST00000548259 ARL13AQ5H913 290 aaPredicted RBP14.97□□□□□ -0.01
VPS29-204ENST00000548259 FAM71E1Q6IPT2 247 aa14.97□□□□□ -0.01
VPS29-204ENST00000548259 SZRD1Q7Z422 152 aa14.97□□□□□ -0.01
VPS29-204ENST00000548259 ZNF100Q8IYN0 542 aa14.97□□□□□ -0.01
VPS29-204ENST00000548259 ZNF527Q8NB42 609 aa14.97□□□□□ -0.01
VPS29-204ENST00000548259 SRXN1Q9BYN0 137 aa14.97□□□□□ -0.01
VPS29-204ENST00000548259 BCO1Q9HAY6 547 aa14.97□□□□□ -0.01
VPS29-204ENST00000548259 ANK2Q01484 3957 aa14.97□□□□□ -0.01
VPS29-204ENST00000548259 OR5H1A6NKK0 313 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 ZNF814B7Z6K7 855 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 H7C417 338 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 ZNF195O14628 629 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 RGS14O43566 566 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 PGRP06401 933 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 LINGO3P0C6S8 592 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 PTNP21246 168 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 EFNA4P52798 201 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 FOXF1Q12946 379 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 HSPB3Q12988 150 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 LCP2Q13094 533 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 ZNF678Q5SXM1 525 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 C11orf71Q6IPW1 123 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 ZNF544Q6NX49 715 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 ZDHHC24Q6UX98 284 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 SEZ6L2Q6UXD5 910 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 MTERF4Q7Z6M4 381 aaKnown RBP14.96□□□□□ -0.01
VPS29-204ENST00000548259 SLC22A9Q8IVM8 553 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 COX18Q8N8Q8 333 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 POC1BQ8TC44 478 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 FAM110BQ8TC76 370 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 C10orf105Q8TEF2 133 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 ZFP90Q8TF47 636 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 NPAS1Q99742 590 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 CHODLQ9H9P2 273 aa14.96□□□□□ -0.01
VPS29-204ENST00000548259 GOLGA8QA0A0J9YX86 632 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 LOC100289279A0A1B0GTE1 492 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 SERTM1A2A2V5 107 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 GOLGA8OA6NCC3 632 aa14.95□□□□□ -0.02
VPS29-204ENST00000548259 GOLGA8NF8WBI6 632 aa14.95□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms